Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15685

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15680 and ABZR87_RS15685 are separated by 4 nucleotidesABZR87_RS15685 and ABZR87_RS15690 are separated by 94 nucleotidesABZR87_RS15690 and ABZR87_RS15695 are separated by 85 nucleotides ABZR87_RS15680: ABZR87_RS15680 - DNA polymerase I, at 3,307,285 to 3,310,098 _RS15680 ABZR87_RS15685: ABZR87_RS15685 - TIGR00730 family Rossman fold protein, at 3,310,103 to 3,311,056 _RS15685 ABZR87_RS15690: ABZR87_RS15690 - hypothetical protein, at 3,311,151 to 3,311,579 _RS15690 ABZR87_RS15695: ABZR87_RS15695 - homoserine kinase, at 3,311,665 to 3,312,669 _RS15695 Position (kb) 3310 3311 3312Strain fitness (log2 ratio) -3 -2 -1 0 1at 3310.111 kb on + strandat 3310.111 kb on + strandat 3310.230 kb on + strand, within ABZR87_RS15685at 3310.230 kb on + strand, within ABZR87_RS15685at 3310.231 kb on - strand, within ABZR87_RS15685at 3310.378 kb on + strand, within ABZR87_RS15685at 3310.420 kb on + strand, within ABZR87_RS15685at 3310.448 kb on + strand, within ABZR87_RS15685at 3310.449 kb on - strand, within ABZR87_RS15685at 3310.449 kb on - strand, within ABZR87_RS15685at 3310.514 kb on + strand, within ABZR87_RS15685at 3310.515 kb on - strand, within ABZR87_RS15685at 3310.517 kb on + strand, within ABZR87_RS15685at 3310.517 kb on + strand, within ABZR87_RS15685at 3310.517 kb on + strand, within ABZR87_RS15685at 3310.517 kb on + strand, within ABZR87_RS15685at 3310.518 kb on - strand, within ABZR87_RS15685at 3310.685 kb on + strand, within ABZR87_RS15685at 3310.686 kb on - strand, within ABZR87_RS15685at 3310.900 kb on + strand, within ABZR87_RS15685at 3310.989 kb on - strandat 3310.989 kb on - strandat 3310.998 kb on - strandat 3310.998 kb on - strandat 3310.998 kb on - strandat 3311.048 kb on + strandat 3311.048 kb on + strandat 3311.049 kb on - strandat 3311.055 kb on - strandat 3311.055 kb on - strandat 3311.113 kb on + strandat 3311.113 kb on + strandat 3311.114 kb on - strandat 3311.120 kb on + strandat 3311.120 kb on + strandat 3311.120 kb on + strandat 3311.121 kb on - strandat 3311.121 kb on - strandat 3311.121 kb on - strandat 3311.121 kb on - strandat 3311.195 kb on + strand, within ABZR87_RS15690at 3311.412 kb on - strand, within ABZR87_RS15690at 3311.487 kb on + strand, within ABZR87_RS15690at 3311.487 kb on + strand, within ABZR87_RS15690at 3311.487 kb on + strand, within ABZR87_RS15690at 3311.488 kb on - strand, within ABZR87_RS15690at 3311.577 kb on + strandat 3311.577 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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3,310,111 + -1.1
3,310,111 + -0.5
3,310,230 + ABZR87_RS15685 0.13 -1.2
3,310,230 + ABZR87_RS15685 0.13 +0.5
3,310,231 - ABZR87_RS15685 0.13 -0.5
3,310,378 + ABZR87_RS15685 0.29 -3.0
3,310,420 + ABZR87_RS15685 0.33 -1.2
3,310,448 + ABZR87_RS15685 0.36 -0.9
3,310,449 - ABZR87_RS15685 0.36 -3.5
3,310,449 - ABZR87_RS15685 0.36 -1.5
3,310,514 + ABZR87_RS15685 0.43 -0.4
3,310,515 - ABZR87_RS15685 0.43 -0.7
3,310,517 + ABZR87_RS15685 0.43 -0.1
3,310,517 + ABZR87_RS15685 0.43 -0.3
3,310,517 + ABZR87_RS15685 0.43 -1.8
3,310,517 + ABZR87_RS15685 0.43 -1.6
3,310,518 - ABZR87_RS15685 0.44 -1.0
3,310,685 + ABZR87_RS15685 0.61 +0.3
3,310,686 - ABZR87_RS15685 0.61 -1.4
3,310,900 + ABZR87_RS15685 0.84 -2.9
3,310,989 - -1.9
3,310,989 - -0.6
3,310,998 - -1.7
3,310,998 - -0.3
3,310,998 - -1.0
3,311,048 + +0.1
3,311,048 + +1.5
3,311,049 - +1.4
3,311,055 - +0.2
3,311,055 - +0.3
3,311,113 + -0.8
3,311,113 + +0.2
3,311,114 - -0.0
3,311,120 + -0.1
3,311,120 + -0.1
3,311,120 + -0.1
3,311,121 - -2.4
3,311,121 - -2.6
3,311,121 - -2.2
3,311,121 - +0.8
3,311,195 + ABZR87_RS15690 0.10 -0.1
3,311,412 - ABZR87_RS15690 0.61 -1.6
3,311,487 + ABZR87_RS15690 0.78 -1.0
3,311,487 + ABZR87_RS15690 0.78 -0.8
3,311,487 + ABZR87_RS15690 0.78 -0.4
3,311,488 - ABZR87_RS15690 0.79 -0.2
3,311,577 + +1.2
3,311,577 + -0.3

Or see this region's nucleotide sequence