Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08870

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08860 and ABZR87_RS08865 are separated by 43 nucleotidesABZR87_RS08865 and ABZR87_RS08870 are separated by 27 nucleotidesABZR87_RS08870 and ABZR87_RS08875 are separated by 90 nucleotides ABZR87_RS08860: ABZR87_RS08860 - pyridoxal phosphate-dependent aminotransferase, at 1,883,120 to 1,884,304 _RS08860 ABZR87_RS08865: ABZR87_RS08865 - transcription antitermination factor NusB, at 1,884,348 to 1,884,815 _RS08865 ABZR87_RS08870: ABZR87_RS08870 - 6,7-dimethyl-8-ribityllumazine synthase, at 1,884,843 to 1,885,343 _RS08870 ABZR87_RS08875: ABZR87_RS08875 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 1,885,434 to 1,886,573 _RS08875 Position (kb) 1884 1885 1886Strain fitness (log2 ratio) -2 -1 0 1 2at 1884.051 kb on + strand, within ABZR87_RS08860at 1884.051 kb on + strand, within ABZR87_RS08860at 1884.051 kb on + strand, within ABZR87_RS08860at 1884.051 kb on + strand, within ABZR87_RS08860at 1884.052 kb on - strand, within ABZR87_RS08860at 1884.052 kb on - strand, within ABZR87_RS08860at 1884.052 kb on - strand, within ABZR87_RS08860at 1884.052 kb on - strand, within ABZR87_RS08860at 1884.052 kb on - strand, within ABZR87_RS08860at 1884.054 kb on + strand, within ABZR87_RS08860at 1884.055 kb on - strand, within ABZR87_RS08860at 1884.102 kb on + strand, within ABZR87_RS08860at 1884.102 kb on + strand, within ABZR87_RS08860at 1884.103 kb on - strand, within ABZR87_RS08860at 1884.325 kb on + strandat 1884.325 kb on + strandat 1884.326 kb on - strandat 1884.349 kb on + strandat 1884.350 kb on - strandat 1884.845 kb on - strandat 1884.845 kb on - strandat 1884.845 kb on - strandat 1885.349 kb on - strandat 1885.349 kb on - strandat 1885.349 kb on - strandat 1885.378 kb on - strandat 1885.417 kb on + strandat 1885.417 kb on + strandat 1885.418 kb on - strandat 1885.418 kb on - strandat 1885.418 kb on - strandat 1885.418 kb on - strandat 1885.418 kb on - strandat 1885.418 kb on - strandat 1885.418 kb on - strandat 1885.418 kb on - strandat 1885.493 kb on - strandat 1885.514 kb on - strandat 1885.514 kb on - strandat 1885.514 kb on - strandat 1885.604 kb on - strand, within ABZR87_RS08875at 1885.604 kb on - strand, within ABZR87_RS08875at 1885.604 kb on - strand, within ABZR87_RS08875at 1885.604 kb on - strand, within ABZR87_RS08875at 1886.314 kb on - strand, within ABZR87_RS08875

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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1,884,051 + ABZR87_RS08860 0.79 -0.7
1,884,051 + ABZR87_RS08860 0.79 -0.6
1,884,051 + ABZR87_RS08860 0.79 +0.1
1,884,051 + ABZR87_RS08860 0.79 +0.3
1,884,052 - ABZR87_RS08860 0.79 -0.6
1,884,052 - ABZR87_RS08860 0.79 -0.1
1,884,052 - ABZR87_RS08860 0.79 -1.7
1,884,052 - ABZR87_RS08860 0.79 +0.1
1,884,052 - ABZR87_RS08860 0.79 +0.6
1,884,054 + ABZR87_RS08860 0.79 +0.0
1,884,055 - ABZR87_RS08860 0.79 -0.4
1,884,102 + ABZR87_RS08860 0.83 -0.4
1,884,102 + ABZR87_RS08860 0.83 -0.1
1,884,103 - ABZR87_RS08860 0.83 +0.1
1,884,325 + -0.2
1,884,325 + +0.3
1,884,326 - +0.0
1,884,349 + +0.2
1,884,350 - +1.2
1,884,845 - +0.8
1,884,845 - -0.2
1,884,845 - +0.1
1,885,349 - +0.1
1,885,349 - +0.2
1,885,349 - -1.0
1,885,378 - -0.2
1,885,417 + +0.0
1,885,417 + +0.2
1,885,418 - -0.3
1,885,418 - -0.9
1,885,418 - +0.3
1,885,418 - -1.6
1,885,418 - -0.5
1,885,418 - -0.1
1,885,418 - +0.3
1,885,418 - -1.0
1,885,493 - +1.8
1,885,514 - -0.2
1,885,514 - +0.5
1,885,514 - -1.1
1,885,604 - ABZR87_RS08875 0.15 -1.1
1,885,604 - ABZR87_RS08875 0.15 -1.3
1,885,604 - ABZR87_RS08875 0.15 -1.0
1,885,604 - ABZR87_RS08875 0.15 -2.1
1,886,314 - ABZR87_RS08875 0.77 -0.4

Or see this region's nucleotide sequence