Experiment: Hexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS08860 and ABZR87_RS08865 are separated by 43 nucleotides ABZR87_RS08865 and ABZR87_RS08870 are separated by 27 nucleotides ABZR87_RS08870 and ABZR87_RS08875 are separated by 90 nucleotides
ABZR87_RS08860: ABZR87_RS08860 - pyridoxal phosphate-dependent aminotransferase, at 1,883,120 to 1,884,304
_RS08860
ABZR87_RS08865: ABZR87_RS08865 - transcription antitermination factor NusB, at 1,884,348 to 1,884,815
_RS08865
ABZR87_RS08870: ABZR87_RS08870 - 6,7-dimethyl-8-ribityllumazine synthase, at 1,884,843 to 1,885,343
_RS08870
ABZR87_RS08875: ABZR87_RS08875 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 1,885,434 to 1,886,573
_RS08875
Position (kb)
1884
1885 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1883.436 kb on + strand, within ABZR87_RS08860 at 1883.436 kb on + strand, within ABZR87_RS08860 at 1883.437 kb on - strand, within ABZR87_RS08860 at 1883.437 kb on - strand, within ABZR87_RS08860 at 1883.478 kb on + strand, within ABZR87_RS08860 at 1883.479 kb on - strand, within ABZR87_RS08860 at 1883.479 kb on - strand, within ABZR87_RS08860 at 1883.592 kb on + strand, within ABZR87_RS08860 at 1883.593 kb on - strand, within ABZR87_RS08860 at 1883.593 kb on - strand, within ABZR87_RS08860 at 1883.661 kb on + strand, within ABZR87_RS08860 at 1883.662 kb on - strand, within ABZR87_RS08860 at 1883.662 kb on - strand, within ABZR87_RS08860 at 1883.662 kb on - strand, within ABZR87_RS08860 at 1883.677 kb on - strand, within ABZR87_RS08860 at 1883.728 kb on + strand, within ABZR87_RS08860 at 1883.728 kb on + strand, within ABZR87_RS08860 at 1883.729 kb on - strand, within ABZR87_RS08860 at 1883.729 kb on - strand, within ABZR87_RS08860 at 1884.051 kb on + strand, within ABZR87_RS08860 at 1884.051 kb on + strand, within ABZR87_RS08860 at 1884.051 kb on + strand, within ABZR87_RS08860 at 1884.051 kb on + strand, within ABZR87_RS08860 at 1884.052 kb on - strand, within ABZR87_RS08860 at 1884.052 kb on - strand, within ABZR87_RS08860 at 1884.052 kb on - strand, within ABZR87_RS08860 at 1884.052 kb on - strand, within ABZR87_RS08860 at 1884.052 kb on - strand, within ABZR87_RS08860 at 1884.054 kb on + strand, within ABZR87_RS08860 at 1884.055 kb on - strand, within ABZR87_RS08860 at 1884.102 kb on + strand, within ABZR87_RS08860 at 1884.102 kb on + strand, within ABZR87_RS08860 at 1884.103 kb on - strand, within ABZR87_RS08860 at 1884.325 kb on + strand at 1884.325 kb on + strand at 1884.326 kb on - strand at 1884.349 kb on + strand at 1884.350 kb on - strand at 1884.845 kb on - strand at 1884.845 kb on - strand at 1884.845 kb on - strand at 1885.349 kb on - strand at 1885.349 kb on - strand at 1885.349 kb on - strand at 1885.378 kb on - strand at 1885.417 kb on + strand at 1885.417 kb on + strand at 1885.418 kb on - strand at 1885.418 kb on - strand at 1885.418 kb on - strand at 1885.418 kb on - strand at 1885.418 kb on - strand at 1885.418 kb on - strand at 1885.418 kb on - strand at 1885.418 kb on - strand at 1885.493 kb on - strand at 1885.514 kb on - strand at 1885.514 kb on - strand at 1885.514 kb on - strand at 1885.604 kb on - strand, within ABZR87_RS08875 at 1885.604 kb on - strand, within ABZR87_RS08875 at 1885.604 kb on - strand, within ABZR87_RS08875 at 1885.604 kb on - strand, within ABZR87_RS08875
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic (C) remove 1,883,436 + ABZR87_RS08860 0.27 +0.0 1,883,436 + ABZR87_RS08860 0.27 +0.1 1,883,437 - ABZR87_RS08860 0.27 +0.4 1,883,437 - ABZR87_RS08860 0.27 +0.5 1,883,478 + ABZR87_RS08860 0.30 +0.8 1,883,479 - ABZR87_RS08860 0.30 -0.1 1,883,479 - ABZR87_RS08860 0.30 +1.0 1,883,592 + ABZR87_RS08860 0.40 +0.1 1,883,593 - ABZR87_RS08860 0.40 +0.1 1,883,593 - ABZR87_RS08860 0.40 -0.4 1,883,661 + ABZR87_RS08860 0.46 +0.1 1,883,662 - ABZR87_RS08860 0.46 +0.1 1,883,662 - ABZR87_RS08860 0.46 -0.4 1,883,662 - ABZR87_RS08860 0.46 +0.5 1,883,677 - ABZR87_RS08860 0.47 +0.7 1,883,728 + ABZR87_RS08860 0.51 +0.4 1,883,728 + ABZR87_RS08860 0.51 +0.7 1,883,729 - ABZR87_RS08860 0.51 +0.8 1,883,729 - ABZR87_RS08860 0.51 +1.0 1,884,051 + ABZR87_RS08860 0.79 -0.7 1,884,051 + ABZR87_RS08860 0.79 -0.6 1,884,051 + ABZR87_RS08860 0.79 +0.1 1,884,051 + ABZR87_RS08860 0.79 +0.3 1,884,052 - ABZR87_RS08860 0.79 -0.6 1,884,052 - ABZR87_RS08860 0.79 -0.1 1,884,052 - ABZR87_RS08860 0.79 -1.7 1,884,052 - ABZR87_RS08860 0.79 +0.1 1,884,052 - ABZR87_RS08860 0.79 +0.6 1,884,054 + ABZR87_RS08860 0.79 +0.0 1,884,055 - ABZR87_RS08860 0.79 -0.4 1,884,102 + ABZR87_RS08860 0.83 -0.4 1,884,102 + ABZR87_RS08860 0.83 -0.1 1,884,103 - ABZR87_RS08860 0.83 +0.1 1,884,325 + -0.2 1,884,325 + +0.3 1,884,326 - +0.0 1,884,349 + +0.2 1,884,350 - +1.2 1,884,845 - +0.8 1,884,845 - -0.2 1,884,845 - +0.1 1,885,349 - +0.1 1,885,349 - +0.2 1,885,349 - -1.0 1,885,378 - -0.2 1,885,417 + +0.0 1,885,417 + +0.2 1,885,418 - -0.3 1,885,418 - -0.9 1,885,418 - +0.3 1,885,418 - -1.6 1,885,418 - -0.5 1,885,418 - -0.1 1,885,418 - +0.3 1,885,418 - -1.0 1,885,493 - +1.8 1,885,514 - -0.2 1,885,514 - +0.5 1,885,514 - -1.1 1,885,604 - ABZR87_RS08875 0.15 -1.1 1,885,604 - ABZR87_RS08875 0.15 -1.3 1,885,604 - ABZR87_RS08875 0.15 -1.0 1,885,604 - ABZR87_RS08875 0.15 -2.1
Or see this region's nucleotide sequence