Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08860

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08855 and ABZR87_RS08860 are separated by 75 nucleotidesABZR87_RS08860 and ABZR87_RS08865 are separated by 43 nucleotidesABZR87_RS08865 and ABZR87_RS08870 are separated by 27 nucleotides ABZR87_RS08855: ABZR87_RS08855 - lytic transglycosylase domain-containing protein, at 1,881,854 to 1,883,044 _RS08855 ABZR87_RS08860: ABZR87_RS08860 - pyridoxal phosphate-dependent aminotransferase, at 1,883,120 to 1,884,304 _RS08860 ABZR87_RS08865: ABZR87_RS08865 - transcription antitermination factor NusB, at 1,884,348 to 1,884,815 _RS08865 ABZR87_RS08870: ABZR87_RS08870 - 6,7-dimethyl-8-ribityllumazine synthase, at 1,884,843 to 1,885,343 _RS08870 Position (kb) 1883 1884 1885Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1882.281 kb on + strand, within ABZR87_RS08855at 1882.281 kb on + strand, within ABZR87_RS08855at 1882.282 kb on - strand, within ABZR87_RS08855at 1882.454 kb on + strand, within ABZR87_RS08855at 1882.469 kb on + strand, within ABZR87_RS08855at 1882.514 kb on + strand, within ABZR87_RS08855at 1882.515 kb on - strand, within ABZR87_RS08855at 1882.658 kb on + strand, within ABZR87_RS08855at 1882.658 kb on + strand, within ABZR87_RS08855at 1882.658 kb on + strand, within ABZR87_RS08855at 1882.658 kb on + strand, within ABZR87_RS08855at 1882.659 kb on - strand, within ABZR87_RS08855at 1882.659 kb on - strand, within ABZR87_RS08855at 1882.659 kb on - strand, within ABZR87_RS08855at 1882.659 kb on - strand, within ABZR87_RS08855at 1882.659 kb on - strand, within ABZR87_RS08855at 1882.659 kb on - strand, within ABZR87_RS08855at 1882.659 kb on - strand, within ABZR87_RS08855at 1882.698 kb on - strand, within ABZR87_RS08855at 1882.698 kb on - strand, within ABZR87_RS08855at 1882.778 kb on + strand, within ABZR87_RS08855at 1882.778 kb on + strand, within ABZR87_RS08855at 1882.778 kb on + strand, within ABZR87_RS08855at 1882.778 kb on + strand, within ABZR87_RS08855at 1882.778 kb on + strand, within ABZR87_RS08855at 1882.778 kb on + strand, within ABZR87_RS08855at 1882.778 kb on + strand, within ABZR87_RS08855at 1882.779 kb on - strand, within ABZR87_RS08855at 1882.779 kb on - strand, within ABZR87_RS08855at 1882.779 kb on - strand, within ABZR87_RS08855at 1882.779 kb on - strand, within ABZR87_RS08855at 1882.779 kb on - strand, within ABZR87_RS08855at 1882.779 kb on - strand, within ABZR87_RS08855at 1882.779 kb on - strand, within ABZR87_RS08855at 1883.023 kb on + strandat 1883.024 kb on - strandat 1883.024 kb on - strandat 1883.024 kb on - strandat 1883.024 kb on - strandat 1883.024 kb on - strandat 1883.024 kb on - strandat 1883.064 kb on + strandat 1883.065 kb on - strandat 1883.065 kb on - strandat 1883.066 kb on + strandat 1883.066 kb on + strandat 1883.066 kb on + strandat 1883.067 kb on - strandat 1883.067 kb on - strandat 1883.067 kb on - strandat 1883.067 kb on - strandat 1883.067 kb on - strandat 1883.068 kb on + strandat 1883.068 kb on + strandat 1883.068 kb on + strandat 1883.068 kb on + strandat 1883.068 kb on + strandat 1883.068 kb on + strandat 1883.068 kb on + strandat 1883.068 kb on + strandat 1883.069 kb on - strandat 1883.069 kb on - strandat 1883.069 kb on - strandat 1883.069 kb on - strandat 1883.069 kb on - strandat 1883.069 kb on - strandat 1883.069 kb on - strandat 1883.069 kb on - strandat 1883.069 kb on - strandat 1883.113 kb on + strandat 1883.114 kb on - strandat 1883.184 kb on + strandat 1883.184 kb on + strandat 1883.184 kb on + strandat 1883.185 kb on - strandat 1883.199 kb on + strandat 1883.199 kb on + strandat 1883.199 kb on + strandat 1883.200 kb on - strandat 1883.200 kb on - strandat 1883.328 kb on + strand, within ABZR87_RS08860at 1883.328 kb on + strand, within ABZR87_RS08860at 1883.328 kb on + strand, within ABZR87_RS08860at 1883.334 kb on + strand, within ABZR87_RS08860at 1883.334 kb on + strand, within ABZR87_RS08860at 1883.334 kb on + strand, within ABZR87_RS08860at 1883.334 kb on + strand, within ABZR87_RS08860at 1883.334 kb on + strand, within ABZR87_RS08860at 1883.334 kb on + strand, within ABZR87_RS08860at 1883.335 kb on - strand, within ABZR87_RS08860at 1883.335 kb on - strand, within ABZR87_RS08860at 1883.335 kb on - strand, within ABZR87_RS08860at 1883.335 kb on - strand, within ABZR87_RS08860at 1883.335 kb on - strand, within ABZR87_RS08860at 1883.335 kb on - strand, within ABZR87_RS08860at 1883.335 kb on - strand, within ABZR87_RS08860at 1883.335 kb on - strand, within ABZR87_RS08860at 1883.335 kb on - strand, within ABZR87_RS08860at 1883.436 kb on + strand, within ABZR87_RS08860at 1883.436 kb on + strand, within ABZR87_RS08860at 1883.437 kb on - strand, within ABZR87_RS08860at 1883.437 kb on - strand, within ABZR87_RS08860at 1883.478 kb on + strand, within ABZR87_RS08860at 1883.479 kb on - strand, within ABZR87_RS08860at 1883.479 kb on - strand, within ABZR87_RS08860at 1883.592 kb on + strand, within ABZR87_RS08860at 1883.593 kb on - strand, within ABZR87_RS08860at 1883.593 kb on - strand, within ABZR87_RS08860at 1883.661 kb on + strand, within ABZR87_RS08860at 1883.662 kb on - strand, within ABZR87_RS08860at 1883.662 kb on - strand, within ABZR87_RS08860at 1883.662 kb on - strand, within ABZR87_RS08860at 1883.677 kb on - strand, within ABZR87_RS08860at 1883.728 kb on + strand, within ABZR87_RS08860at 1883.728 kb on + strand, within ABZR87_RS08860at 1883.729 kb on - strand, within ABZR87_RS08860at 1883.729 kb on - strand, within ABZR87_RS08860at 1884.051 kb on + strand, within ABZR87_RS08860at 1884.051 kb on + strand, within ABZR87_RS08860at 1884.051 kb on + strand, within ABZR87_RS08860at 1884.051 kb on + strand, within ABZR87_RS08860at 1884.052 kb on - strand, within ABZR87_RS08860at 1884.052 kb on - strand, within ABZR87_RS08860at 1884.052 kb on - strand, within ABZR87_RS08860at 1884.052 kb on - strand, within ABZR87_RS08860at 1884.052 kb on - strand, within ABZR87_RS08860at 1884.054 kb on + strand, within ABZR87_RS08860at 1884.055 kb on - strand, within ABZR87_RS08860at 1884.102 kb on + strand, within ABZR87_RS08860at 1884.102 kb on + strand, within ABZR87_RS08860at 1884.103 kb on - strand, within ABZR87_RS08860at 1884.325 kb on + strandat 1884.325 kb on + strandat 1884.326 kb on - strandat 1884.349 kb on + strandat 1884.350 kb on - strandat 1884.845 kb on - strandat 1884.845 kb on - strandat 1884.845 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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1,882,281 + ABZR87_RS08855 0.36 -0.9
1,882,281 + ABZR87_RS08855 0.36 -0.0
1,882,282 - ABZR87_RS08855 0.36 +0.3
1,882,454 + ABZR87_RS08855 0.50 +0.8
1,882,469 + ABZR87_RS08855 0.52 +1.4
1,882,514 + ABZR87_RS08855 0.55 -1.1
1,882,515 - ABZR87_RS08855 0.55 -0.7
1,882,658 + ABZR87_RS08855 0.68 -0.1
1,882,658 + ABZR87_RS08855 0.68 -0.3
1,882,658 + ABZR87_RS08855 0.68 +1.8
1,882,658 + ABZR87_RS08855 0.68 -0.7
1,882,659 - ABZR87_RS08855 0.68 -0.2
1,882,659 - ABZR87_RS08855 0.68 +0.4
1,882,659 - ABZR87_RS08855 0.68 -1.8
1,882,659 - ABZR87_RS08855 0.68 +0.1
1,882,659 - ABZR87_RS08855 0.68 -0.9
1,882,659 - ABZR87_RS08855 0.68 -0.5
1,882,659 - ABZR87_RS08855 0.68 -0.4
1,882,698 - ABZR87_RS08855 0.71 -0.3
1,882,698 - ABZR87_RS08855 0.71 -0.5
1,882,778 + ABZR87_RS08855 0.78 +0.7
1,882,778 + ABZR87_RS08855 0.78 -0.8
1,882,778 + ABZR87_RS08855 0.78 -1.0
1,882,778 + ABZR87_RS08855 0.78 -0.6
1,882,778 + ABZR87_RS08855 0.78 +0.9
1,882,778 + ABZR87_RS08855 0.78 +1.2
1,882,778 + ABZR87_RS08855 0.78 -0.5
1,882,779 - ABZR87_RS08855 0.78 +2.9
1,882,779 - ABZR87_RS08855 0.78 -0.2
1,882,779 - ABZR87_RS08855 0.78 -0.2
1,882,779 - ABZR87_RS08855 0.78 -0.8
1,882,779 - ABZR87_RS08855 0.78 -1.2
1,882,779 - ABZR87_RS08855 0.78 +1.2
1,882,779 - ABZR87_RS08855 0.78 -0.0
1,883,023 + -0.1
1,883,024 - -0.2
1,883,024 - -0.4
1,883,024 - +0.2
1,883,024 - +0.4
1,883,024 - -0.2
1,883,024 - -0.6
1,883,064 + -1.1
1,883,065 - +0.3
1,883,065 - -0.6
1,883,066 + -0.6
1,883,066 + +0.2
1,883,066 + -0.4
1,883,067 - +1.7
1,883,067 - -0.2
1,883,067 - +0.1
1,883,067 - +0.4
1,883,067 - +0.6
1,883,068 + -0.6
1,883,068 + +0.4
1,883,068 + +0.9
1,883,068 + +0.1
1,883,068 + +0.3
1,883,068 + -0.0
1,883,068 + -0.1
1,883,068 + -0.1
1,883,069 - -0.2
1,883,069 - +0.6
1,883,069 - +0.0
1,883,069 - -1.6
1,883,069 - +1.4
1,883,069 - -0.0
1,883,069 - -0.4
1,883,069 - +0.5
1,883,069 - +0.2
1,883,113 + +0.1
1,883,114 - -0.3
1,883,184 + +0.2
1,883,184 + -0.2
1,883,184 + -0.1
1,883,185 - -2.2
1,883,199 + -0.1
1,883,199 + +0.5
1,883,199 + +0.1
1,883,200 - +0.3
1,883,200 - -0.3
1,883,328 + ABZR87_RS08860 0.18 +0.2
1,883,328 + ABZR87_RS08860 0.18 +0.2
1,883,328 + ABZR87_RS08860 0.18 -0.1
1,883,334 + ABZR87_RS08860 0.18 +0.2
1,883,334 + ABZR87_RS08860 0.18 -0.6
1,883,334 + ABZR87_RS08860 0.18 +0.3
1,883,334 + ABZR87_RS08860 0.18 -0.5
1,883,334 + ABZR87_RS08860 0.18 +0.5
1,883,334 + ABZR87_RS08860 0.18 -0.5
1,883,335 - ABZR87_RS08860 0.18 +0.5
1,883,335 - ABZR87_RS08860 0.18 +0.2
1,883,335 - ABZR87_RS08860 0.18 +0.4
1,883,335 - ABZR87_RS08860 0.18 +0.2
1,883,335 - ABZR87_RS08860 0.18 +0.5
1,883,335 - ABZR87_RS08860 0.18 -0.9
1,883,335 - ABZR87_RS08860 0.18 +1.1
1,883,335 - ABZR87_RS08860 0.18 +0.6
1,883,335 - ABZR87_RS08860 0.18 -1.2
1,883,436 + ABZR87_RS08860 0.27 +0.0
1,883,436 + ABZR87_RS08860 0.27 +0.1
1,883,437 - ABZR87_RS08860 0.27 +0.4
1,883,437 - ABZR87_RS08860 0.27 +0.5
1,883,478 + ABZR87_RS08860 0.30 +0.8
1,883,479 - ABZR87_RS08860 0.30 -0.1
1,883,479 - ABZR87_RS08860 0.30 +1.0
1,883,592 + ABZR87_RS08860 0.40 +0.1
1,883,593 - ABZR87_RS08860 0.40 +0.1
1,883,593 - ABZR87_RS08860 0.40 -0.4
1,883,661 + ABZR87_RS08860 0.46 +0.1
1,883,662 - ABZR87_RS08860 0.46 +0.1
1,883,662 - ABZR87_RS08860 0.46 -0.4
1,883,662 - ABZR87_RS08860 0.46 +0.5
1,883,677 - ABZR87_RS08860 0.47 +0.7
1,883,728 + ABZR87_RS08860 0.51 +0.4
1,883,728 + ABZR87_RS08860 0.51 +0.7
1,883,729 - ABZR87_RS08860 0.51 +0.8
1,883,729 - ABZR87_RS08860 0.51 +1.0
1,884,051 + ABZR87_RS08860 0.79 -0.7
1,884,051 + ABZR87_RS08860 0.79 -0.6
1,884,051 + ABZR87_RS08860 0.79 +0.1
1,884,051 + ABZR87_RS08860 0.79 +0.3
1,884,052 - ABZR87_RS08860 0.79 -0.6
1,884,052 - ABZR87_RS08860 0.79 -0.1
1,884,052 - ABZR87_RS08860 0.79 -1.7
1,884,052 - ABZR87_RS08860 0.79 +0.1
1,884,052 - ABZR87_RS08860 0.79 +0.6
1,884,054 + ABZR87_RS08860 0.79 +0.0
1,884,055 - ABZR87_RS08860 0.79 -0.4
1,884,102 + ABZR87_RS08860 0.83 -0.4
1,884,102 + ABZR87_RS08860 0.83 -0.1
1,884,103 - ABZR87_RS08860 0.83 +0.1
1,884,325 + -0.2
1,884,325 + +0.3
1,884,326 - +0.0
1,884,349 + +0.2
1,884,350 - +1.2
1,884,845 - +0.8
1,884,845 - -0.2
1,884,845 - +0.1

Or see this region's nucleotide sequence