Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06960

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06955 and ABZR87_RS06960 are separated by 94 nucleotidesABZR87_RS06960 and ABZR87_RS06965 are separated by 197 nucleotidesABZR87_RS06965 and ABZR87_RS06970 are separated by 50 nucleotides ABZR87_RS06955: ABZR87_RS06955 - pitrilysin family protein, at 1,471,278 to 1,472,630 _RS06955 ABZR87_RS06960: ABZR87_RS06960 - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 1,472,725 to 1,473,381 _RS06960 ABZR87_RS06965: ABZR87_RS06965 - pantetheine-phosphate adenylyltransferase, at 1,473,579 to 1,474,082 _RS06965 ABZR87_RS06970: ABZR87_RS06970 - YfhL family 4Fe-4S dicluster ferredoxin, at 1,474,133 to 1,474,396 _RS06970 Position (kb) 1472 1473 1474Strain fitness (log2 ratio) -2 -1 0 1 2at 1471.821 kb on + strand, within ABZR87_RS06955at 1471.821 kb on + strand, within ABZR87_RS06955at 1471.822 kb on - strand, within ABZR87_RS06955at 1471.897 kb on - strand, within ABZR87_RS06955at 1471.897 kb on - strand, within ABZR87_RS06955at 1471.899 kb on + strand, within ABZR87_RS06955at 1471.899 kb on + strand, within ABZR87_RS06955at 1471.900 kb on - strand, within ABZR87_RS06955at 1471.900 kb on - strand, within ABZR87_RS06955at 1471.911 kb on + strand, within ABZR87_RS06955at 1471.911 kb on + strand, within ABZR87_RS06955at 1471.912 kb on - strand, within ABZR87_RS06955at 1471.912 kb on - strand, within ABZR87_RS06955at 1471.912 kb on - strand, within ABZR87_RS06955at 1471.989 kb on - strand, within ABZR87_RS06955at 1472.142 kb on + strand, within ABZR87_RS06955at 1472.142 kb on + strand, within ABZR87_RS06955at 1472.142 kb on + strand, within ABZR87_RS06955at 1472.142 kb on + strand, within ABZR87_RS06955at 1472.142 kb on + strand, within ABZR87_RS06955at 1472.143 kb on - strand, within ABZR87_RS06955at 1472.166 kb on + strand, within ABZR87_RS06955at 1472.166 kb on + strand, within ABZR87_RS06955at 1472.167 kb on - strand, within ABZR87_RS06955at 1472.167 kb on - strand, within ABZR87_RS06955at 1472.167 kb on - strand, within ABZR87_RS06955at 1472.167 kb on - strand, within ABZR87_RS06955at 1472.167 kb on - strand, within ABZR87_RS06955at 1472.235 kb on + strand, within ABZR87_RS06955at 1472.235 kb on + strand, within ABZR87_RS06955at 1472.235 kb on + strand, within ABZR87_RS06955at 1472.235 kb on + strand, within ABZR87_RS06955at 1472.235 kb on + strand, within ABZR87_RS06955at 1472.236 kb on - strand, within ABZR87_RS06955at 1472.236 kb on - strand, within ABZR87_RS06955at 1472.236 kb on - strand, within ABZR87_RS06955at 1472.250 kb on + strand, within ABZR87_RS06955at 1472.250 kb on + strand, within ABZR87_RS06955at 1472.250 kb on + strand, within ABZR87_RS06955at 1472.251 kb on - strand, within ABZR87_RS06955at 1472.251 kb on - strand, within ABZR87_RS06955at 1472.478 kb on + strand, within ABZR87_RS06955at 1472.479 kb on - strand, within ABZR87_RS06955at 1472.496 kb on + strandat 1472.496 kb on + strandat 1472.497 kb on - strandat 1472.504 kb on + strandat 1472.504 kb on + strandat 1472.504 kb on + strandat 1472.505 kb on - strandat 1472.505 kb on - strandat 1472.505 kb on - strandat 1472.505 kb on - strandat 1472.596 kb on + strandat 1472.597 kb on - strandat 1472.633 kb on + strandat 1472.633 kb on + strandat 1472.634 kb on - strandat 1472.634 kb on - strandat 1472.634 kb on - strandat 1472.634 kb on - strandat 1472.695 kb on + strandat 1472.695 kb on + strandat 1472.696 kb on - strandat 1472.696 kb on - strandat 1472.696 kb on - strandat 1472.713 kb on - strandat 1472.736 kb on + strandat 1472.736 kb on + strandat 1472.737 kb on - strandat 1472.821 kb on + strand, within ABZR87_RS06960at 1472.822 kb on - strand, within ABZR87_RS06960at 1472.822 kb on - strand, within ABZR87_RS06960at 1472.822 kb on - strand, within ABZR87_RS06960at 1473.226 kb on + strand, within ABZR87_RS06960at 1473.226 kb on + strand, within ABZR87_RS06960at 1473.226 kb on + strand, within ABZR87_RS06960at 1473.226 kb on + strand, within ABZR87_RS06960at 1473.227 kb on - strand, within ABZR87_RS06960at 1473.380 kb on - strandat 1474.081 kb on - strandat 1474.358 kb on + strand, within ABZR87_RS06970at 1474.358 kb on + strand, within ABZR87_RS06970at 1474.358 kb on + strand, within ABZR87_RS06970at 1474.358 kb on + strand, within ABZR87_RS06970at 1474.358 kb on + strand, within ABZR87_RS06970at 1474.358 kb on + strand, within ABZR87_RS06970at 1474.359 kb on - strand, within ABZR87_RS06970at 1474.359 kb on - strand, within ABZR87_RS06970at 1474.359 kb on - strand, within ABZR87_RS06970at 1474.359 kb on - strand, within ABZR87_RS06970at 1474.359 kb on - strand, within ABZR87_RS06970

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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1,471,821 + ABZR87_RS06955 0.40 -0.8
1,471,821 + ABZR87_RS06955 0.40 -0.3
1,471,822 - ABZR87_RS06955 0.40 -1.9
1,471,897 - ABZR87_RS06955 0.46 -1.1
1,471,897 - ABZR87_RS06955 0.46 +0.1
1,471,899 + ABZR87_RS06955 0.46 -0.2
1,471,899 + ABZR87_RS06955 0.46 -0.8
1,471,900 - ABZR87_RS06955 0.46 -1.5
1,471,900 - ABZR87_RS06955 0.46 -0.4
1,471,911 + ABZR87_RS06955 0.47 -0.1
1,471,911 + ABZR87_RS06955 0.47 -0.2
1,471,912 - ABZR87_RS06955 0.47 +0.5
1,471,912 - ABZR87_RS06955 0.47 -1.0
1,471,912 - ABZR87_RS06955 0.47 +1.0
1,471,989 - ABZR87_RS06955 0.53 -0.4
1,472,142 + ABZR87_RS06955 0.64 -0.2
1,472,142 + ABZR87_RS06955 0.64 -1.2
1,472,142 + ABZR87_RS06955 0.64 +1.8
1,472,142 + ABZR87_RS06955 0.64 -1.0
1,472,142 + ABZR87_RS06955 0.64 -1.5
1,472,143 - ABZR87_RS06955 0.64 -0.1
1,472,166 + ABZR87_RS06955 0.66 -0.5
1,472,166 + ABZR87_RS06955 0.66 -0.3
1,472,167 - ABZR87_RS06955 0.66 -0.4
1,472,167 - ABZR87_RS06955 0.66 -1.8
1,472,167 - ABZR87_RS06955 0.66 -1.2
1,472,167 - ABZR87_RS06955 0.66 -1.0
1,472,167 - ABZR87_RS06955 0.66 -1.1
1,472,235 + ABZR87_RS06955 0.71 -1.3
1,472,235 + ABZR87_RS06955 0.71 -0.2
1,472,235 + ABZR87_RS06955 0.71 -0.2
1,472,235 + ABZR87_RS06955 0.71 -0.6
1,472,235 + ABZR87_RS06955 0.71 -0.6
1,472,236 - ABZR87_RS06955 0.71 -0.6
1,472,236 - ABZR87_RS06955 0.71 -1.6
1,472,236 - ABZR87_RS06955 0.71 -1.0
1,472,250 + ABZR87_RS06955 0.72 -2.3
1,472,250 + ABZR87_RS06955 0.72 -0.8
1,472,250 + ABZR87_RS06955 0.72 -1.1
1,472,251 - ABZR87_RS06955 0.72 +1.0
1,472,251 - ABZR87_RS06955 0.72 -1.1
1,472,478 + ABZR87_RS06955 0.89 -0.8
1,472,479 - ABZR87_RS06955 0.89 -0.8
1,472,496 + -2.5
1,472,496 + -1.5
1,472,497 - -2.0
1,472,504 + -1.0
1,472,504 + -0.7
1,472,504 + -0.3
1,472,505 - -0.6
1,472,505 - -0.7
1,472,505 - +1.0
1,472,505 - -0.9
1,472,596 + +0.5
1,472,597 - -0.3
1,472,633 + +0.2
1,472,633 + +0.5
1,472,634 - +1.9
1,472,634 - -0.8
1,472,634 - +2.0
1,472,634 - +1.2
1,472,695 + +1.1
1,472,695 + +0.1
1,472,696 - +2.6
1,472,696 - -0.0
1,472,696 - +0.7
1,472,713 - +0.0
1,472,736 + +0.3
1,472,736 + +0.9
1,472,737 - +0.6
1,472,821 + ABZR87_RS06960 0.15 +0.4
1,472,822 - ABZR87_RS06960 0.15 -0.4
1,472,822 - ABZR87_RS06960 0.15 +0.3
1,472,822 - ABZR87_RS06960 0.15 +0.3
1,473,226 + ABZR87_RS06960 0.76 +1.2
1,473,226 + ABZR87_RS06960 0.76 -0.3
1,473,226 + ABZR87_RS06960 0.76 +0.3
1,473,226 + ABZR87_RS06960 0.76 +0.4
1,473,227 - ABZR87_RS06960 0.76 -0.0
1,473,380 - +0.1
1,474,081 - +0.2
1,474,358 + ABZR87_RS06970 0.85 +0.6
1,474,358 + ABZR87_RS06970 0.85 +1.1
1,474,358 + ABZR87_RS06970 0.85 -0.5
1,474,358 + ABZR87_RS06970 0.85 -1.0
1,474,358 + ABZR87_RS06970 0.85 +0.1
1,474,358 + ABZR87_RS06970 0.85 +0.9
1,474,359 - ABZR87_RS06970 0.86 -0.2
1,474,359 - ABZR87_RS06970 0.86 +0.5
1,474,359 - ABZR87_RS06970 0.86 +1.0
1,474,359 - ABZR87_RS06970 0.86 +0.4
1,474,359 - ABZR87_RS06970 0.86 -0.4

Or see this region's nucleotide sequence