Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04165

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04160 and ABZR87_RS04165 are separated by 105 nucleotidesABZR87_RS04165 and ABZR87_RS04170 overlap by 15 nucleotidesABZR87_RS04170 and ABZR87_RS04175 are separated by 169 nucleotides ABZR87_RS04160: ABZR87_RS04160 - LysR family transcriptional regulator, at 871,574 to 872,470 _RS04160 ABZR87_RS04165: ABZR87_RS04165 - SDR family oxidoreductase, at 872,576 to 873,544 _RS04165 ABZR87_RS04170: ABZR87_RS04170 - phosphonate degradation HD-domain oxygenase, at 873,530 to 874,081 _RS04170 ABZR87_RS04175: ABZR87_RS04175 - cupin domain-containing protein, at 874,251 to 874,628 _RS04175 Position (kb) 872 873 874Strain fitness (log2 ratio) -2 -1 0 1 2at 871.590 kb on + strandat 871.590 kb on + strandat 871.590 kb on + strandat 871.590 kb on + strandat 871.590 kb on + strandat 871.590 kb on + strandat 871.590 kb on + strandat 871.590 kb on + strandat 871.590 kb on + strandat 871.591 kb on - strandat 871.591 kb on - strandat 871.591 kb on - strandat 871.885 kb on - strand, within ABZR87_RS04160at 871.948 kb on - strand, within ABZR87_RS04160at 871.948 kb on - strand, within ABZR87_RS04160at 871.948 kb on - strand, within ABZR87_RS04160at 872.107 kb on - strand, within ABZR87_RS04160at 872.160 kb on + strand, within ABZR87_RS04160at 872.439 kb on + strandat 872.440 kb on - strandat 872.440 kb on - strandat 872.470 kb on + strandat 872.481 kb on - strandat 872.617 kb on - strandat 872.924 kb on + strand, within ABZR87_RS04165at 872.924 kb on + strand, within ABZR87_RS04165at 872.924 kb on + strand, within ABZR87_RS04165at 872.925 kb on - strand, within ABZR87_RS04165at 872.925 kb on - strand, within ABZR87_RS04165at 872.925 kb on - strand, within ABZR87_RS04165at 872.925 kb on - strand, within ABZR87_RS04165at 872.925 kb on - strand, within ABZR87_RS04165at 872.925 kb on - strand, within ABZR87_RS04165at 873.191 kb on + strand, within ABZR87_RS04165at 873.191 kb on + strand, within ABZR87_RS04165at 873.192 kb on - strand, within ABZR87_RS04165at 873.192 kb on - strand, within ABZR87_RS04165at 873.192 kb on - strand, within ABZR87_RS04165at 873.192 kb on - strand, within ABZR87_RS04165at 873.263 kb on + strand, within ABZR87_RS04165at 873.264 kb on - strand, within ABZR87_RS04165at 873.422 kb on + strand, within ABZR87_RS04165at 873.422 kb on + strand, within ABZR87_RS04165at 873.423 kb on - strand, within ABZR87_RS04165at 873.423 kb on - strand, within ABZR87_RS04165at 873.532 kb on - strandat 873.532 kb on - strandat 873.532 kb on - strandat 873.717 kb on - strand, within ABZR87_RS04170at 873.741 kb on + strand, within ABZR87_RS04170at 873.741 kb on + strand, within ABZR87_RS04170at 873.741 kb on + strand, within ABZR87_RS04170at 873.742 kb on - strand, within ABZR87_RS04170at 873.742 kb on - strand, within ABZR87_RS04170at 873.744 kb on + strand, within ABZR87_RS04170at 873.744 kb on + strand, within ABZR87_RS04170at 873.745 kb on - strand, within ABZR87_RS04170at 873.745 kb on - strand, within ABZR87_RS04170at 873.849 kb on + strand, within ABZR87_RS04170at 873.849 kb on + strand, within ABZR87_RS04170at 873.849 kb on + strand, within ABZR87_RS04170at 873.849 kb on + strand, within ABZR87_RS04170at 873.850 kb on - strand, within ABZR87_RS04170at 873.850 kb on - strand, within ABZR87_RS04170at 873.850 kb on - strand, within ABZR87_RS04170at 874.024 kb on - strand, within ABZR87_RS04170at 874.024 kb on - strand, within ABZR87_RS04170at 874.117 kb on - strandat 874.158 kb on + strandat 874.159 kb on - strandat 874.216 kb on + strandat 874.217 kb on - strandat 874.217 kb on - strandat 874.270 kb on + strandat 874.270 kb on + strandat 874.270 kb on + strandat 874.270 kb on + strandat 874.271 kb on - strandat 874.271 kb on - strandat 874.305 kb on + strand, within ABZR87_RS04175at 874.306 kb on - strand, within ABZR87_RS04175at 874.306 kb on - strand, within ABZR87_RS04175at 874.306 kb on - strand, within ABZR87_RS04175at 874.306 kb on - strand, within ABZR87_RS04175at 874.306 kb on - strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.423 kb on - strand, within ABZR87_RS04175at 874.423 kb on - strand, within ABZR87_RS04175

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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871,590 + -0.5
871,590 + -0.4
871,590 + +0.2
871,590 + -0.5
871,590 + -0.5
871,590 + +0.6
871,590 + -0.7
871,590 + -0.5
871,590 + -0.4
871,591 - -0.3
871,591 - -0.7
871,591 - +0.4
871,885 - ABZR87_RS04160 0.35 -0.5
871,948 - ABZR87_RS04160 0.42 -0.8
871,948 - ABZR87_RS04160 0.42 +0.7
871,948 - ABZR87_RS04160 0.42 -0.6
872,107 - ABZR87_RS04160 0.59 +0.0
872,160 + ABZR87_RS04160 0.65 +0.8
872,439 + -0.9
872,440 - -0.0
872,440 - -0.8
872,470 + +0.4
872,481 - +0.5
872,617 - -0.7
872,924 + ABZR87_RS04165 0.36 -0.4
872,924 + ABZR87_RS04165 0.36 +0.5
872,924 + ABZR87_RS04165 0.36 -0.3
872,925 - ABZR87_RS04165 0.36 +0.3
872,925 - ABZR87_RS04165 0.36 -0.5
872,925 - ABZR87_RS04165 0.36 +0.6
872,925 - ABZR87_RS04165 0.36 -2.2
872,925 - ABZR87_RS04165 0.36 +0.0
872,925 - ABZR87_RS04165 0.36 -0.4
873,191 + ABZR87_RS04165 0.63 +0.3
873,191 + ABZR87_RS04165 0.63 +0.1
873,192 - ABZR87_RS04165 0.64 +0.2
873,192 - ABZR87_RS04165 0.64 -0.9
873,192 - ABZR87_RS04165 0.64 -0.2
873,192 - ABZR87_RS04165 0.64 +0.3
873,263 + ABZR87_RS04165 0.71 -0.1
873,264 - ABZR87_RS04165 0.71 -0.0
873,422 + ABZR87_RS04165 0.87 -0.1
873,422 + ABZR87_RS04165 0.87 -0.3
873,423 - ABZR87_RS04165 0.87 -0.7
873,423 - ABZR87_RS04165 0.87 -0.4
873,532 - -0.3
873,532 - +0.7
873,532 - -0.0
873,717 - ABZR87_RS04170 0.34 +0.5
873,741 + ABZR87_RS04170 0.38 -0.8
873,741 + ABZR87_RS04170 0.38 +0.7
873,741 + ABZR87_RS04170 0.38 +0.3
873,742 - ABZR87_RS04170 0.38 +0.0
873,742 - ABZR87_RS04170 0.38 +1.0
873,744 + ABZR87_RS04170 0.39 -0.2
873,744 + ABZR87_RS04170 0.39 +0.4
873,745 - ABZR87_RS04170 0.39 +0.2
873,745 - ABZR87_RS04170 0.39 +0.1
873,849 + ABZR87_RS04170 0.58 +0.0
873,849 + ABZR87_RS04170 0.58 +0.3
873,849 + ABZR87_RS04170 0.58 +0.4
873,849 + ABZR87_RS04170 0.58 -0.3
873,850 - ABZR87_RS04170 0.58 +0.1
873,850 - ABZR87_RS04170 0.58 +1.8
873,850 - ABZR87_RS04170 0.58 +0.5
874,024 - ABZR87_RS04170 0.89 +0.6
874,024 - ABZR87_RS04170 0.89 +1.2
874,117 - +0.5
874,158 + +0.1
874,159 - +0.8
874,216 + +0.4
874,217 - -1.0
874,217 - -0.8
874,270 + +0.7
874,270 + -0.4
874,270 + +0.7
874,270 + +0.5
874,271 - -0.0
874,271 - -1.0
874,305 + ABZR87_RS04175 0.14 -0.8
874,306 - ABZR87_RS04175 0.15 +2.2
874,306 - ABZR87_RS04175 0.15 +0.3
874,306 - ABZR87_RS04175 0.15 +0.0
874,306 - ABZR87_RS04175 0.15 +0.2
874,306 - ABZR87_RS04175 0.15 +0.8
874,344 + ABZR87_RS04175 0.25 -0.4
874,344 + ABZR87_RS04175 0.25 +1.4
874,344 + ABZR87_RS04175 0.25 +0.5
874,344 + ABZR87_RS04175 0.25 -0.5
874,344 + ABZR87_RS04175 0.25 +0.2
874,344 + ABZR87_RS04175 0.25 -0.6
874,344 + ABZR87_RS04175 0.25 +0.7
874,344 + ABZR87_RS04175 0.25 -0.3
874,344 + ABZR87_RS04175 0.25 -0.5
874,345 - ABZR87_RS04175 0.25 -0.4
874,345 - ABZR87_RS04175 0.25 +0.9
874,345 - ABZR87_RS04175 0.25 -0.3
874,345 - ABZR87_RS04175 0.25 -0.7
874,345 - ABZR87_RS04175 0.25 -1.0
874,345 - ABZR87_RS04175 0.25 +0.3
874,345 - ABZR87_RS04175 0.25 -0.3
874,423 - ABZR87_RS04175 0.46 -0.0
874,423 - ABZR87_RS04175 0.46 +0.1

Or see this region's nucleotide sequence