Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS17310 and RS_RS17315 are separated by 219 nucleotides RS_RS17315 and RS_RS17320 are separated by 36 nucleotides
RS_RS17310: RS_RS17310 - porin, at 28,877 to 29,251
_RS17310
RS_RS17315: RS_RS17315 - hypothetical protein, at 29,471 to 29,677
_RS17315
RS_RS17320: RS_RS17320 - divalent metal cation transporter, at 29,714 to 31,357
_RS17320
Position (kb) 29
30 Strain fitness (log2 ratio) -1
0
1 at 28.484 kb on + strand at 28.484 kb on + strand at 28.485 kb on - strand at 28.590 kb on + strand at 28.590 kb on + strand at 28.591 kb on - strand at 28.670 kb on + strand at 28.690 kb on + strand at 28.694 kb on + strand at 28.694 kb on + strand at 28.694 kb on + strand at 28.694 kb on + strand at 28.694 kb on + strand at 28.694 kb on + strand at 28.694 kb on + strand at 28.694 kb on + strand at 28.694 kb on + strand at 28.694 kb on + strand at 28.694 kb on + strand at 28.695 kb on - strand at 28.695 kb on - strand at 28.695 kb on - strand at 28.695 kb on - strand at 28.695 kb on - strand at 28.695 kb on - strand at 28.695 kb on - strand at 28.695 kb on - strand at 28.695 kb on - strand at 28.698 kb on + strand at 28.698 kb on + strand at 29.102 kb on + strand, within RS_RS17310 at 29.103 kb on - strand, within RS_RS17310 at 29.272 kb on + strand at 29.272 kb on + strand at 29.272 kb on + strand at 29.272 kb on + strand at 29.273 kb on - strand at 29.318 kb on + strand at 29.318 kb on + strand at 29.318 kb on + strand at 29.318 kb on + strand at 29.633 kb on + strand, within RS_RS17315 at 29.667 kb on - strand at 29.675 kb on + strand at 29.675 kb on + strand at 29.675 kb on + strand at 29.676 kb on - strand at 29.713 kb on + strand at 29.714 kb on - strand at 29.930 kb on + strand, within RS_RS17320 at 29.930 kb on + strand, within RS_RS17320 at 29.930 kb on + strand, within RS_RS17320 at 29.931 kb on - strand, within RS_RS17320 at 29.931 kb on - strand, within RS_RS17320 at 29.999 kb on + strand, within RS_RS17320 at 29.999 kb on + strand, within RS_RS17320 at 29.999 kb on + strand, within RS_RS17320 at 30.000 kb on - strand, within RS_RS17320 at 30.000 kb on - strand, within RS_RS17320 at 30.000 kb on - strand, within RS_RS17320 at 30.173 kb on + strand, within RS_RS17320 at 30.174 kb on - strand, within RS_RS17320 at 30.174 kb on - strand, within RS_RS17320 at 30.464 kb on + strand, within RS_RS17320 at 30.464 kb on + strand, within RS_RS17320 at 30.464 kb on + strand, within RS_RS17320 at 30.465 kb on - strand, within RS_RS17320 at 30.465 kb on - strand, within RS_RS17320 at 30.465 kb on - strand, within RS_RS17320 at 30.571 kb on + strand, within RS_RS17320 at 30.572 kb on - strand, within RS_RS17320
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days remove 28,484 + +0.1 28,484 + +0.1 28,485 - +0.0 28,590 + +0.2 28,590 + -0.0 28,591 - -0.4 28,670 + +0.4 28,690 + -1.0 28,694 + -0.2 28,694 + -0.2 28,694 + -0.0 28,694 + +0.2 28,694 + -1.2 28,694 + -0.2 28,694 + +0.0 28,694 + +0.0 28,694 + +1.3 28,694 + -0.3 28,694 + +0.1 28,695 - +0.3 28,695 - -0.1 28,695 - +0.1 28,695 - -0.1 28,695 - -1.0 28,695 - +0.6 28,695 - -0.0 28,695 - -0.4 28,695 - +0.1 28,698 + +0.8 28,698 + +0.9 29,102 + RS_RS17310 0.60 -0.6 29,103 - RS_RS17310 0.60 +0.7 29,272 + -0.5 29,272 + -0.9 29,272 + -0.4 29,272 + +0.6 29,273 - +0.4 29,318 + -0.5 29,318 + -0.5 29,318 + -0.7 29,318 + -0.4 29,633 + RS_RS17315 0.78 -1.0 29,667 - -0.2 29,675 + -0.1 29,675 + -0.5 29,675 + -0.9 29,676 - +0.2 29,713 + +0.1 29,714 - +0.0 29,930 + RS_RS17320 0.13 -0.2 29,930 + RS_RS17320 0.13 +0.2 29,930 + RS_RS17320 0.13 -0.0 29,931 - RS_RS17320 0.13 -0.5 29,931 - RS_RS17320 0.13 -0.6 29,999 + RS_RS17320 0.17 -0.4 29,999 + RS_RS17320 0.17 -1.1 29,999 + RS_RS17320 0.17 +0.5 30,000 - RS_RS17320 0.17 +0.4 30,000 - RS_RS17320 0.17 +0.0 30,000 - RS_RS17320 0.17 -0.1 30,173 + RS_RS17320 0.28 -0.3 30,174 - RS_RS17320 0.28 +0.2 30,174 - RS_RS17320 0.28 -0.1 30,464 + RS_RS17320 0.46 -0.8 30,464 + RS_RS17320 0.46 +0.2 30,464 + RS_RS17320 0.46 -0.4 30,465 - RS_RS17320 0.46 +0.1 30,465 - RS_RS17320 0.46 -0.3 30,465 - RS_RS17320 0.46 +0.1 30,571 + RS_RS17320 0.52 -0.0 30,572 - RS_RS17320 0.52 -0.1
Or see this region's nucleotide sequence