Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS17080

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS17075 and RS_RS17080 overlap by 4 nucleotidesRS_RS17080 and RS_RS17085 overlap by 4 nucleotidesRS_RS17085 and RS_RS17090 are separated by 20 nucleotides RS_RS17075: RS_RS17075 - FAD-binding oxidoreductase, at 3,683,472 to 3,684,779 _RS17075 RS_RS17080: RS_RS17080 - amino acid ABC transporter ATP-binding protein, at 3,684,776 to 3,685,537 _RS17080 RS_RS17085: RS_RS17085 - ectoine/hydroxyectoine ABC transporter permease subunit EhuD, at 3,685,534 to 3,686,205 _RS17085 RS_RS17090: RS_RS17090 - amino acid ABC transporter substrate-binding protein, at 3,686,226 to 3,686,993 _RS17090 Position (kb) 3684 3685 3686Strain fitness (log2 ratio) -1 0 1 2at 3683.884 kb on + strand, within RS_RS17075at 3683.884 kb on + strand, within RS_RS17075at 3683.885 kb on - strand, within RS_RS17075at 3683.975 kb on + strand, within RS_RS17075at 3683.975 kb on + strand, within RS_RS17075at 3683.976 kb on - strand, within RS_RS17075at 3684.191 kb on - strand, within RS_RS17075at 3684.191 kb on - strand, within RS_RS17075at 3684.358 kb on + strand, within RS_RS17075at 3684.638 kb on - strand, within RS_RS17075at 3684.638 kb on - strand, within RS_RS17075at 3685.613 kb on + strand, within RS_RS17085at 3685.613 kb on + strand, within RS_RS17085at 3685.614 kb on - strand, within RS_RS17085at 3685.614 kb on - strand, within RS_RS17085at 3685.614 kb on - strand, within RS_RS17085at 3685.614 kb on - strand, within RS_RS17085at 3685.614 kb on - strand, within RS_RS17085at 3685.632 kb on + strand, within RS_RS17085at 3685.632 kb on + strand, within RS_RS17085at 3685.632 kb on + strand, within RS_RS17085at 3685.633 kb on - strand, within RS_RS17085at 3685.634 kb on + strand, within RS_RS17085at 3685.746 kb on + strand, within RS_RS17085at 3685.746 kb on + strand, within RS_RS17085at 3685.747 kb on - strand, within RS_RS17085at 3685.747 kb on - strand, within RS_RS17085at 3685.747 kb on - strand, within RS_RS17085at 3685.747 kb on - strand, within RS_RS17085at 3685.755 kb on - strand, within RS_RS17085at 3685.904 kb on + strand, within RS_RS17085at 3685.904 kb on + strand, within RS_RS17085at 3685.976 kb on + strand, within RS_RS17085at 3685.977 kb on - strand, within RS_RS17085at 3685.977 kb on - strand, within RS_RS17085at 3685.977 kb on - strand, within RS_RS17085at 3685.977 kb on - strand, within RS_RS17085at 3685.982 kb on + strand, within RS_RS17085at 3685.983 kb on - strand, within RS_RS17085at 3685.983 kb on - strand, within RS_RS17085at 3685.983 kb on - strand, within RS_RS17085at 3685.983 kb on - strand, within RS_RS17085at 3685.983 kb on - strand, within RS_RS17085at 3686.366 kb on - strand, within RS_RS17090at 3686.414 kb on - strand, within RS_RS17090at 3686.495 kb on - strand, within RS_RS17090

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
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3,683,884 + RS_RS17075 0.31 +0.8
3,683,884 + RS_RS17075 0.31 +0.2
3,683,885 - RS_RS17075 0.32 +0.8
3,683,975 + RS_RS17075 0.38 +0.9
3,683,975 + RS_RS17075 0.38 -0.4
3,683,976 - RS_RS17075 0.39 -0.8
3,684,191 - RS_RS17075 0.55 +0.3
3,684,191 - RS_RS17075 0.55 +0.0
3,684,358 + RS_RS17075 0.68 -0.0
3,684,638 - RS_RS17075 0.89 +0.4
3,684,638 - RS_RS17075 0.89 +0.2
3,685,613 + RS_RS17085 0.12 +0.4
3,685,613 + RS_RS17085 0.12 +0.7
3,685,614 - RS_RS17085 0.12 -0.4
3,685,614 - RS_RS17085 0.12 -0.4
3,685,614 - RS_RS17085 0.12 +0.0
3,685,614 - RS_RS17085 0.12 -0.1
3,685,614 - RS_RS17085 0.12 +0.1
3,685,632 + RS_RS17085 0.15 +0.5
3,685,632 + RS_RS17085 0.15 +0.2
3,685,632 + RS_RS17085 0.15 -1.1
3,685,633 - RS_RS17085 0.15 -0.4
3,685,634 + RS_RS17085 0.15 +0.9
3,685,746 + RS_RS17085 0.32 -0.2
3,685,746 + RS_RS17085 0.32 +0.1
3,685,747 - RS_RS17085 0.32 -0.9
3,685,747 - RS_RS17085 0.32 +0.3
3,685,747 - RS_RS17085 0.32 +0.7
3,685,747 - RS_RS17085 0.32 +0.7
3,685,755 - RS_RS17085 0.33 +1.1
3,685,904 + RS_RS17085 0.55 +1.2
3,685,904 + RS_RS17085 0.55 +2.7
3,685,976 + RS_RS17085 0.66 +0.6
3,685,977 - RS_RS17085 0.66 +0.8
3,685,977 - RS_RS17085 0.66 +0.2
3,685,977 - RS_RS17085 0.66 -0.0
3,685,977 - RS_RS17085 0.66 -0.8
3,685,982 + RS_RS17085 0.67 -0.3
3,685,983 - RS_RS17085 0.67 +0.3
3,685,983 - RS_RS17085 0.67 +0.3
3,685,983 - RS_RS17085 0.67 -0.2
3,685,983 - RS_RS17085 0.67 +0.1
3,685,983 - RS_RS17085 0.67 -0.6
3,686,366 - RS_RS17090 0.18 +0.6
3,686,414 - RS_RS17090 0.24 +0.5
3,686,495 - RS_RS17090 0.35 -0.2

Or see this region's nucleotide sequence