Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS07330 and RS_RS07335 are separated by 57 nucleotides RS_RS07335 and RS_RS07340 are separated by 32 nucleotides RS_RS07340 and RS_RS07345 are separated by 28 nucleotides
RS_RS07330: RS_RS07330 - aldehyde dehydrogenase family protein, at 1,557,122 to 1,558,558
_RS07330
RS_RS07335: RS_RS07335 - DUF1289 domain-containing protein, at 1,558,616 to 1,558,891
_RS07335
RS_RS07340: RS_RS07340 - glycoside hydrolase family 15 protein, at 1,558,924 to 1,560,783
_RS07340
RS_RS07345: RS_RS07345 - DUF2252 domain-containing protein, at 1,560,812 to 1,562,053
_RS07345
Position (kb) 1558
1559
1560
1561 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1558.038 kb on - strand, within RS_RS07330 at 1558.066 kb on + strand, within RS_RS07330 at 1558.196 kb on + strand, within RS_RS07330 at 1558.334 kb on + strand, within RS_RS07330 at 1558.334 kb on + strand, within RS_RS07330 at 1558.334 kb on + strand, within RS_RS07330 at 1558.334 kb on + strand, within RS_RS07330 at 1558.335 kb on - strand, within RS_RS07330 at 1558.335 kb on - strand, within RS_RS07330 at 1558.335 kb on - strand, within RS_RS07330 at 1558.353 kb on + strand, within RS_RS07330 at 1558.397 kb on - strand, within RS_RS07330 at 1558.497 kb on - strand at 1558.995 kb on + strand at 1559.048 kb on + strand at 1559.049 kb on - strand at 1559.151 kb on - strand, within RS_RS07340 at 1559.151 kb on - strand, within RS_RS07340 at 1559.219 kb on + strand, within RS_RS07340 at 1559.660 kb on + strand, within RS_RS07340 at 1559.685 kb on - strand, within RS_RS07340 at 1559.748 kb on - strand, within RS_RS07340 at 1559.804 kb on + strand, within RS_RS07340 at 1559.804 kb on + strand, within RS_RS07340 at 1559.804 kb on + strand, within RS_RS07340 at 1559.804 kb on + strand, within RS_RS07340 at 1559.804 kb on + strand, within RS_RS07340 at 1559.805 kb on - strand, within RS_RS07340 at 1559.805 kb on - strand, within RS_RS07340 at 1559.805 kb on - strand, within RS_RS07340 at 1559.879 kb on + strand, within RS_RS07340 at 1559.879 kb on + strand, within RS_RS07340 at 1560.020 kb on + strand, within RS_RS07340 at 1560.020 kb on + strand, within RS_RS07340 at 1560.307 kb on + strand, within RS_RS07340 at 1560.584 kb on + strand, within RS_RS07340 at 1560.761 kb on - strand at 1560.762 kb on - strand at 1560.821 kb on - strand at 1560.821 kb on - strand at 1560.842 kb on + strand at 1560.843 kb on - strand at 1560.843 kb on - strand at 1560.843 kb on - strand at 1560.935 kb on + strand at 1561.016 kb on + strand, within RS_RS07345 at 1561.017 kb on - strand, within RS_RS07345 at 1561.307 kb on + strand, within RS_RS07345 at 1561.308 kb on - strand, within RS_RS07345 at 1561.517 kb on + strand, within RS_RS07345 at 1561.518 kb on - strand, within RS_RS07345 at 1561.518 kb on - strand, within RS_RS07345 at 1561.745 kb on + strand, within RS_RS07345
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days remove 1,558,038 - RS_RS07330 0.64 +0.7 1,558,066 + RS_RS07330 0.66 +0.0 1,558,196 + RS_RS07330 0.75 -1.0 1,558,334 + RS_RS07330 0.84 -2.0 1,558,334 + RS_RS07330 0.84 +0.1 1,558,334 + RS_RS07330 0.84 -0.8 1,558,334 + RS_RS07330 0.84 +0.0 1,558,335 - RS_RS07330 0.84 +0.4 1,558,335 - RS_RS07330 0.84 -0.0 1,558,335 - RS_RS07330 0.84 -0.1 1,558,353 + RS_RS07330 0.86 +0.6 1,558,397 - RS_RS07330 0.89 +1.4 1,558,497 - +0.2 1,558,995 + -0.4 1,559,048 + -0.1 1,559,049 - +0.1 1,559,151 - RS_RS07340 0.12 -0.9 1,559,151 - RS_RS07340 0.12 -0.7 1,559,219 + RS_RS07340 0.16 -0.1 1,559,660 + RS_RS07340 0.40 -0.2 1,559,685 - RS_RS07340 0.41 -0.9 1,559,748 - RS_RS07340 0.44 -0.1 1,559,804 + RS_RS07340 0.47 -1.0 1,559,804 + RS_RS07340 0.47 -0.5 1,559,804 + RS_RS07340 0.47 -0.1 1,559,804 + RS_RS07340 0.47 +1.3 1,559,804 + RS_RS07340 0.47 +0.5 1,559,805 - RS_RS07340 0.47 -0.7 1,559,805 - RS_RS07340 0.47 -0.4 1,559,805 - RS_RS07340 0.47 +0.2 1,559,879 + RS_RS07340 0.51 -0.9 1,559,879 + RS_RS07340 0.51 -1.8 1,560,020 + RS_RS07340 0.59 +0.4 1,560,020 + RS_RS07340 0.59 +0.1 1,560,307 + RS_RS07340 0.74 +3.1 1,560,584 + RS_RS07340 0.89 -0.4 1,560,761 - +0.1 1,560,762 - -0.6 1,560,821 - -0.3 1,560,821 - +0.4 1,560,842 + +0.5 1,560,843 - +0.4 1,560,843 - -0.0 1,560,843 - -0.1 1,560,935 + -0.2 1,561,016 + RS_RS07345 0.16 -0.4 1,561,017 - RS_RS07345 0.17 -0.5 1,561,307 + RS_RS07345 0.40 -0.2 1,561,308 - RS_RS07345 0.40 +0.2 1,561,517 + RS_RS07345 0.57 -0.4 1,561,518 - RS_RS07345 0.57 -0.6 1,561,518 - RS_RS07345 0.57 -0.3 1,561,745 + RS_RS07345 0.75 -1.0
Or see this region's nucleotide sequence