Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS05660

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRS_RS05650 and RS_RS05655 are separated by 10 nucleotidesRS_RS05655 and RS_RS05660 overlap by 4 nucleotidesRS_RS05660 and RS_RS05665 overlap by 4 nucleotides RS_RS05650: RS_RS05650 - alpha/beta hydrolase, at 1,192,363 to 1,193,286 _RS05650 RS_RS05655: RS_RS05655 - thiol-disulfide oxidoreductase DCC family protein, at 1,193,297 to 1,193,686 _RS05655 RS_RS05660: RS_RS05660 - DUF4166 domain-containing protein, at 1,193,683 to 1,194,225 _RS05660 RS_RS05665: RS_RS05665 - KR domain-containing protein, at 1,194,222 to 1,195,349 _RS05665 Position (kb) 1193 1194 1195Strain fitness (log2 ratio) -1 0 1at 1192.879 kb on + strand, within RS_RS05650at 1192.879 kb on + strand, within RS_RS05650at 1192.880 kb on - strand, within RS_RS05650at 1192.880 kb on - strand, within RS_RS05650at 1192.880 kb on - strand, within RS_RS05650at 1192.880 kb on - strand, within RS_RS05650at 1193.042 kb on - strand, within RS_RS05650at 1193.899 kb on - strand, within RS_RS05660at 1194.379 kb on + strand, within RS_RS05665at 1194.380 kb on - strand, within RS_RS05665at 1194.604 kb on - strand, within RS_RS05665at 1194.787 kb on + strand, within RS_RS05665at 1195.021 kb on + strand, within RS_RS05665at 1195.022 kb on - strand, within RS_RS05665at 1195.022 kb on - strand, within RS_RS05665at 1195.022 kb on - strand, within RS_RS05665at 1195.060 kb on + strand, within RS_RS05665

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
remove
1,192,879 + RS_RS05650 0.56 +0.6
1,192,879 + RS_RS05650 0.56 -0.2
1,192,880 - RS_RS05650 0.56 +0.4
1,192,880 - RS_RS05650 0.56 +0.4
1,192,880 - RS_RS05650 0.56 +0.3
1,192,880 - RS_RS05650 0.56 +0.2
1,193,042 - RS_RS05650 0.73 -0.1
1,193,899 - RS_RS05660 0.40 -0.9
1,194,379 + RS_RS05665 0.14 +0.9
1,194,380 - RS_RS05665 0.14 -0.2
1,194,604 - RS_RS05665 0.34 +1.7
1,194,787 + RS_RS05665 0.50 -0.2
1,195,021 + RS_RS05665 0.71 +0.1
1,195,022 - RS_RS05665 0.71 -0.6
1,195,022 - RS_RS05665 0.71 -0.0
1,195,022 - RS_RS05665 0.71 -0.7
1,195,060 + RS_RS05665 0.74 -0.3

Or see this region's nucleotide sequence