Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS01370

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS01365 and RS_RS01370 are separated by 107 nucleotidesRS_RS01370 and RS_RS01375 are separated by 168 nucleotidesRS_RS01375 and RS_RS01380 are separated by 160 nucleotides RS_RS01365: RS_RS01365 - bifunctional isocitrate dehydrogenase kinase/phosphatase, at 310,322 to 312,148 _RS01365 RS_RS01370: RS_RS01370 - isovaleryl-CoA dehydrogenase, at 312,256 to 313,437 _RS01370 RS_RS01375: RS_RS01375 - MerR family DNA-binding transcriptional regulator, at 313,606 to 314,103 _RS01375 RS_RS01380: RS_RS01380 - Zn-dependent hydrolase, at 314,264 to 315,343 _RS01380 Position (kb) 312 313 314Strain fitness (log2 ratio) -3 -2 -1 0 1at 311.259 kb on + strand, within RS_RS01365at 311.259 kb on + strand, within RS_RS01365at 311.260 kb on - strand, within RS_RS01365at 311.310 kb on + strand, within RS_RS01365at 311.310 kb on + strand, within RS_RS01365at 311.343 kb on + strand, within RS_RS01365at 311.398 kb on + strand, within RS_RS01365at 311.487 kb on + strand, within RS_RS01365at 311.487 kb on + strand, within RS_RS01365at 311.487 kb on + strand, within RS_RS01365at 311.487 kb on + strand, within RS_RS01365at 311.487 kb on + strand, within RS_RS01365at 311.488 kb on - strand, within RS_RS01365at 311.589 kb on + strand, within RS_RS01365at 311.737 kb on - strand, within RS_RS01365at 311.784 kb on + strand, within RS_RS01365at 311.971 kb on - strandat 311.971 kb on - strandat 312.067 kb on - strandat 312.193 kb on + strandat 312.193 kb on + strandat 312.193 kb on + strandat 312.193 kb on + strandat 312.194 kb on - strandat 312.194 kb on - strandat 312.194 kb on - strandat 312.272 kb on + strandat 312.272 kb on + strandat 312.273 kb on - strandat 312.329 kb on + strandat 312.330 kb on - strandat 312.378 kb on - strand, within RS_RS01370at 312.440 kb on + strand, within RS_RS01370at 312.522 kb on - strand, within RS_RS01370at 312.554 kb on + strand, within RS_RS01370at 312.554 kb on + strand, within RS_RS01370at 312.554 kb on + strand, within RS_RS01370at 312.555 kb on - strand, within RS_RS01370at 312.555 kb on - strand, within RS_RS01370at 312.555 kb on - strand, within RS_RS01370at 312.629 kb on + strand, within RS_RS01370at 312.977 kb on + strand, within RS_RS01370at 312.978 kb on - strand, within RS_RS01370at 312.978 kb on - strand, within RS_RS01370at 313.091 kb on + strand, within RS_RS01370at 313.091 kb on + strand, within RS_RS01370at 313.091 kb on + strand, within RS_RS01370at 313.091 kb on + strand, within RS_RS01370at 313.091 kb on + strand, within RS_RS01370at 313.224 kb on - strand, within RS_RS01370at 313.244 kb on + strand, within RS_RS01370at 313.244 kb on + strand, within RS_RS01370at 313.245 kb on - strand, within RS_RS01370at 313.808 kb on + strand, within RS_RS01375at 313.901 kb on + strand, within RS_RS01375at 313.901 kb on + strand, within RS_RS01375at 313.902 kb on - strand, within RS_RS01375at 313.962 kb on - strand, within RS_RS01375at 313.962 kb on - strand, within RS_RS01375at 314.103 kb on + strandat 314.103 kb on + strandat 314.104 kb on - strandat 314.104 kb on - strandat 314.104 kb on - strandat 314.104 kb on - strandat 314.104 kb on - strandat 314.104 kb on - strandat 314.104 kb on - strandat 314.164 kb on + strandat 314.196 kb on + strandat 314.196 kb on + strandat 314.245 kb on + strandat 314.352 kb on - strandat 314.352 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
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311,259 + RS_RS01365 0.51 -1.7
311,259 + RS_RS01365 0.51 -1.8
311,260 - RS_RS01365 0.51 -0.0
311,310 + RS_RS01365 0.54 -2.1
311,310 + RS_RS01365 0.54 +0.5
311,343 + RS_RS01365 0.56 -2.3
311,398 + RS_RS01365 0.59 -3.0
311,487 + RS_RS01365 0.64 -2.7
311,487 + RS_RS01365 0.64 -1.7
311,487 + RS_RS01365 0.64 -1.8
311,487 + RS_RS01365 0.64 -1.0
311,487 + RS_RS01365 0.64 +0.7
311,488 - RS_RS01365 0.64 -0.3
311,589 + RS_RS01365 0.69 -0.4
311,737 - RS_RS01365 0.77 -0.3
311,784 + RS_RS01365 0.80 -0.6
311,971 - +0.1
311,971 - +0.2
312,067 - -1.5
312,193 + +0.8
312,193 + -0.3
312,193 + -0.1
312,193 + +0.7
312,194 - +0.6
312,194 - +0.4
312,194 - -0.0
312,272 + -1.8
312,272 + -0.4
312,273 - -2.3
312,329 + -0.2
312,330 - -0.2
312,378 - RS_RS01370 0.10 -1.6
312,440 + RS_RS01370 0.16 -0.0
312,522 - RS_RS01370 0.23 -0.3
312,554 + RS_RS01370 0.25 +1.7
312,554 + RS_RS01370 0.25 -0.5
312,554 + RS_RS01370 0.25 -0.6
312,555 - RS_RS01370 0.25 +0.5
312,555 - RS_RS01370 0.25 -0.5
312,555 - RS_RS01370 0.25 -0.5
312,629 + RS_RS01370 0.32 -0.3
312,977 + RS_RS01370 0.61 -1.3
312,978 - RS_RS01370 0.61 -0.4
312,978 - RS_RS01370 0.61 -0.1
313,091 + RS_RS01370 0.71 -0.1
313,091 + RS_RS01370 0.71 -0.3
313,091 + RS_RS01370 0.71 -0.2
313,091 + RS_RS01370 0.71 -0.7
313,091 + RS_RS01370 0.71 -1.4
313,224 - RS_RS01370 0.82 -0.2
313,244 + RS_RS01370 0.84 +0.2
313,244 + RS_RS01370 0.84 +0.1
313,245 - RS_RS01370 0.84 -0.4
313,808 + RS_RS01375 0.41 +0.0
313,901 + RS_RS01375 0.59 +0.2
313,901 + RS_RS01375 0.59 +0.4
313,902 - RS_RS01375 0.59 -0.6
313,962 - RS_RS01375 0.71 +0.7
313,962 - RS_RS01375 0.71 -0.1
314,103 + +0.6
314,103 + +0.3
314,104 - +0.3
314,104 - +0.1
314,104 - +0.4
314,104 - +0.3
314,104 - +0.2
314,104 - +0.2
314,104 - -0.1
314,164 + -0.8
314,196 + -0.2
314,196 + +0.7
314,245 + -0.3
314,352 - -0.7
314,352 - +0.5

Or see this region's nucleotide sequence