Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS00460

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS00450 and RS_RS00455 are separated by 91 nucleotidesRS_RS00455 and RS_RS00460 are separated by 8 nucleotidesRS_RS00460 and RS_RS00465 are separated by 13 nucleotidesRS_RS00465 and RS_RS00470 are separated by 66 nucleotides RS_RS00450: RS_RS00450 - 5-formyltetrahydrofolate cyclo-ligase, at 103,618 to 104,223 _RS00450 RS_RS00455: RS_RS00455 - competence protein TfoX, at 104,315 to 104,773 _RS00455 RS_RS00460: RS_RS00460 - methylenetetrahydrofolate reductase [NAD(P)H], at 104,782 to 105,612 _RS00460 RS_RS00465: RS_RS00465 - phage holin family protein, at 105,626 to 105,967 _RS00465 RS_RS00470: RS_RS00470 - adenosylhomocysteinase, at 106,034 to 107,458 _RS00470 Position (kb) 104 105 106Strain fitness (log2 ratio) -2 -1 0 1at 103.963 kb on + strand, within RS_RS00450at 103.964 kb on - strand, within RS_RS00450at 104.074 kb on + strand, within RS_RS00450at 104.074 kb on + strand, within RS_RS00450at 104.074 kb on + strand, within RS_RS00450at 104.305 kb on + strandat 104.517 kb on + strand, within RS_RS00455at 104.616 kb on + strand, within RS_RS00455at 104.617 kb on - strand, within RS_RS00455at 104.662 kb on - strand, within RS_RS00455at 104.783 kb on + strandat 104.837 kb on + strandat 105.089 kb on + strand, within RS_RS00460at 105.089 kb on + strand, within RS_RS00460at 105.110 kb on + strand, within RS_RS00460at 105.111 kb on - strand, within RS_RS00460at 105.198 kb on - strand, within RS_RS00460at 105.206 kb on + strand, within RS_RS00460at 105.207 kb on - strand, within RS_RS00460at 105.356 kb on + strand, within RS_RS00460at 105.356 kb on + strand, within RS_RS00460at 105.356 kb on + strand, within RS_RS00460at 105.356 kb on + strand, within RS_RS00460at 105.356 kb on + strand, within RS_RS00460at 105.357 kb on - strand, within RS_RS00460at 105.357 kb on - strand, within RS_RS00460at 105.672 kb on + strand, within RS_RS00465at 105.673 kb on - strand, within RS_RS00465at 105.673 kb on - strand, within RS_RS00465at 105.673 kb on - strand, within RS_RS00465at 105.838 kb on + strand, within RS_RS00465at 105.838 kb on + strand, within RS_RS00465at 105.838 kb on + strand, within RS_RS00465at 105.912 kb on + strand, within RS_RS00465at 105.913 kb on - strand, within RS_RS00465at 105.913 kb on - strand, within RS_RS00465at 106.022 kb on - strandat 106.035 kb on + strandat 106.035 kb on + strandat 106.036 kb on - strandat 106.036 kb on - strandat 106.036 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
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103,963 + RS_RS00450 0.57 -0.9
103,964 - RS_RS00450 0.57 -0.8
104,074 + RS_RS00450 0.75 +1.7
104,074 + RS_RS00450 0.75 -0.7
104,074 + RS_RS00450 0.75 -1.2
104,305 + +0.2
104,517 + RS_RS00455 0.44 -0.4
104,616 + RS_RS00455 0.66 +1.1
104,617 - RS_RS00455 0.66 +0.1
104,662 - RS_RS00455 0.76 +0.5
104,783 + -0.3
104,837 + -0.6
105,089 + RS_RS00460 0.37 +0.7
105,089 + RS_RS00460 0.37 -0.6
105,110 + RS_RS00460 0.39 -0.9
105,111 - RS_RS00460 0.40 -1.4
105,198 - RS_RS00460 0.50 -0.0
105,206 + RS_RS00460 0.51 -0.9
105,207 - RS_RS00460 0.51 -0.3
105,356 + RS_RS00460 0.69 -1.5
105,356 + RS_RS00460 0.69 -0.7
105,356 + RS_RS00460 0.69 -1.6
105,356 + RS_RS00460 0.69 -0.1
105,356 + RS_RS00460 0.69 -1.0
105,357 - RS_RS00460 0.69 -0.9
105,357 - RS_RS00460 0.69 -1.0
105,672 + RS_RS00465 0.13 -0.1
105,673 - RS_RS00465 0.14 +0.7
105,673 - RS_RS00465 0.14 -0.2
105,673 - RS_RS00465 0.14 -1.1
105,838 + RS_RS00465 0.62 -0.1
105,838 + RS_RS00465 0.62 -0.3
105,838 + RS_RS00465 0.62 -0.4
105,912 + RS_RS00465 0.84 -1.9
105,913 - RS_RS00465 0.84 -0.9
105,913 - RS_RS00465 0.84 -0.6
106,022 - +1.1
106,035 + +0.7
106,035 + +0.5
106,036 - -0.3
106,036 - +0.3
106,036 - -0.3

Or see this region's nucleotide sequence