Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4714

Experiment: KB with Terpene 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4713 and Psyr_4714 are separated by 15 nucleotidesPsyr_4714 and Psyr_4715 overlap by 4 nucleotides Psyr_4713: Psyr_4713 - Sarcosine oxidase, beta subunit, heterotetrameric, at 5,584,702 to 5,585,952 _4713 Psyr_4714: Psyr_4714 - Sarcosine oxidase, delta subunit, heterotetrameric, at 5,585,968 to 5,586,264 _4714 Psyr_4715: Psyr_4715 - Sarcosine oxidase, alpha subunit, heterotetrameric, at 5,586,261 to 5,589,281 _4715 Position (kb) 5585 5586 5587Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5584.978 kb on + strand, within Psyr_4713at 5584.978 kb on + strand, within Psyr_4713at 5584.979 kb on - strand, within Psyr_4713at 5585.026 kb on + strand, within Psyr_4713at 5585.026 kb on + strand, within Psyr_4713at 5585.026 kb on + strand, within Psyr_4713at 5585.026 kb on + strand, within Psyr_4713at 5585.027 kb on - strand, within Psyr_4713at 5585.027 kb on - strand, within Psyr_4713at 5585.027 kb on - strand, within Psyr_4713at 5585.027 kb on - strand, within Psyr_4713at 5585.056 kb on + strand, within Psyr_4713at 5585.056 kb on + strand, within Psyr_4713at 5585.057 kb on - strand, within Psyr_4713at 5585.057 kb on - strand, within Psyr_4713at 5585.057 kb on - strand, within Psyr_4713at 5585.548 kb on + strand, within Psyr_4713at 5585.548 kb on + strand, within Psyr_4713at 5585.549 kb on - strand, within Psyr_4713at 5585.549 kb on - strand, within Psyr_4713at 5585.976 kb on + strandat 5585.976 kb on + strandat 5585.976 kb on + strandat 5585.976 kb on + strandat 5585.976 kb on + strandat 5585.976 kb on + strandat 5585.976 kb on + strandat 5585.977 kb on - strandat 5585.977 kb on - strandat 5585.977 kb on - strandat 5586.094 kb on + strand, within Psyr_4714at 5586.094 kb on + strand, within Psyr_4714at 5586.094 kb on + strand, within Psyr_4714at 5586.094 kb on + strand, within Psyr_4714at 5586.094 kb on + strand, within Psyr_4714at 5586.095 kb on - strand, within Psyr_4714at 5586.095 kb on - strand, within Psyr_4714at 5586.095 kb on - strand, within Psyr_4714at 5586.095 kb on - strand, within Psyr_4714at 5586.095 kb on - strand, within Psyr_4714at 5586.095 kb on - strand, within Psyr_4714at 5586.095 kb on - strand, within Psyr_4714at 5586.095 kb on - strand, within Psyr_4714at 5586.095 kb on - strand, within Psyr_4714at 5586.095 kb on - strand, within Psyr_4714at 5586.143 kb on + strand, within Psyr_4714at 5586.143 kb on + strand, within Psyr_4714at 5586.167 kb on - strand, within Psyr_4714at 5586.167 kb on - strand, within Psyr_4714at 5586.196 kb on + strand, within Psyr_4714at 5586.196 kb on + strand, within Psyr_4714at 5586.197 kb on - strand, within Psyr_4714at 5586.260 kb on + strandat 5586.260 kb on + strandat 5586.260 kb on + strandat 5586.260 kb on + strandat 5586.260 kb on + strandat 5586.260 kb on + strandat 5586.260 kb on + strandat 5586.261 kb on - strandat 5586.261 kb on - strandat 5586.261 kb on - strandat 5586.323 kb on + strandat 5586.324 kb on - strandat 5586.399 kb on - strandat 5586.420 kb on + strandat 5586.420 kb on + strandat 5586.421 kb on - strandat 5586.421 kb on - strandat 5586.538 kb on - strandat 5586.642 kb on + strand, within Psyr_4715at 5586.642 kb on + strand, within Psyr_4715at 5586.643 kb on - strand, within Psyr_4715at 5586.645 kb on + strand, within Psyr_4715at 5586.646 kb on - strand, within Psyr_4715at 5586.660 kb on + strand, within Psyr_4715at 5586.661 kb on - strand, within Psyr_4715at 5586.684 kb on + strand, within Psyr_4715at 5586.685 kb on - strand, within Psyr_4715at 5586.693 kb on + strand, within Psyr_4715at 5586.693 kb on + strand, within Psyr_4715at 5586.694 kb on - strand, within Psyr_4715at 5586.694 kb on - strand, within Psyr_4715at 5586.694 kb on - strand, within Psyr_4715at 5586.694 kb on - strand, within Psyr_4715at 5586.750 kb on + strand, within Psyr_4715at 5586.751 kb on - strand, within Psyr_4715at 5587.016 kb on + strand, within Psyr_4715at 5587.016 kb on + strand, within Psyr_4715at 5587.017 kb on - strand, within Psyr_4715at 5587.118 kb on - strand, within Psyr_4715at 5587.155 kb on + strand, within Psyr_4715at 5587.155 kb on + strand, within Psyr_4715at 5587.156 kb on - strand, within Psyr_4715at 5587.206 kb on + strand, within Psyr_4715at 5587.207 kb on - strand, within Psyr_4715at 5587.207 kb on - strand, within Psyr_4715at 5587.207 kb on - strand, within Psyr_4715at 5587.207 kb on - strand, within Psyr_4715at 5587.207 kb on - strand, within Psyr_4715

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Terpene 10 mM
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5,584,978 + Psyr_4713 0.22 +1.2
5,584,978 + Psyr_4713 0.22 -0.5
5,584,979 - Psyr_4713 0.22 -1.7
5,585,026 + Psyr_4713 0.26 -0.2
5,585,026 + Psyr_4713 0.26 -0.4
5,585,026 + Psyr_4713 0.26 +1.5
5,585,026 + Psyr_4713 0.26 -0.7
5,585,027 - Psyr_4713 0.26 -1.1
5,585,027 - Psyr_4713 0.26 +1.0
5,585,027 - Psyr_4713 0.26 +0.4
5,585,027 - Psyr_4713 0.26 -2.0
5,585,056 + Psyr_4713 0.28 -0.2
5,585,056 + Psyr_4713 0.28 +2.7
5,585,057 - Psyr_4713 0.28 +0.6
5,585,057 - Psyr_4713 0.28 +1.6
5,585,057 - Psyr_4713 0.28 -0.3
5,585,548 + Psyr_4713 0.68 -1.2
5,585,548 + Psyr_4713 0.68 +0.8
5,585,549 - Psyr_4713 0.68 +0.3
5,585,549 - Psyr_4713 0.68 -0.3
5,585,976 + +0.6
5,585,976 + +0.9
5,585,976 + -0.4
5,585,976 + -2.2
5,585,976 + -1.0
5,585,976 + -0.2
5,585,976 + +3.0
5,585,977 - +3.1
5,585,977 - +0.0
5,585,977 - -0.8
5,586,094 + Psyr_4714 0.42 +2.7
5,586,094 + Psyr_4714 0.42 +0.4
5,586,094 + Psyr_4714 0.42 -1.4
5,586,094 + Psyr_4714 0.42 +1.1
5,586,094 + Psyr_4714 0.42 +2.1
5,586,095 - Psyr_4714 0.43 -0.3
5,586,095 - Psyr_4714 0.43 +2.6
5,586,095 - Psyr_4714 0.43 +1.1
5,586,095 - Psyr_4714 0.43 -1.1
5,586,095 - Psyr_4714 0.43 +0.8
5,586,095 - Psyr_4714 0.43 -0.7
5,586,095 - Psyr_4714 0.43 +0.1
5,586,095 - Psyr_4714 0.43 +0.2
5,586,095 - Psyr_4714 0.43 +0.3
5,586,095 - Psyr_4714 0.43 +1.1
5,586,143 + Psyr_4714 0.59 +2.9
5,586,143 + Psyr_4714 0.59 -0.4
5,586,167 - Psyr_4714 0.67 -0.3
5,586,167 - Psyr_4714 0.67 +0.3
5,586,196 + Psyr_4714 0.77 +3.1
5,586,196 + Psyr_4714 0.77 -0.2
5,586,197 - Psyr_4714 0.77 +1.0
5,586,260 + +0.4
5,586,260 + -0.5
5,586,260 + -0.4
5,586,260 + +1.1
5,586,260 + +1.0
5,586,260 + -0.1
5,586,260 + -2.6
5,586,261 - +0.4
5,586,261 - +1.1
5,586,261 - -1.3
5,586,323 + -0.5
5,586,324 - -0.6
5,586,399 - +0.1
5,586,420 + -1.0
5,586,420 + +1.0
5,586,421 - -0.7
5,586,421 - +0.7
5,586,538 - -0.1
5,586,642 + Psyr_4715 0.13 -1.5
5,586,642 + Psyr_4715 0.13 +0.9
5,586,643 - Psyr_4715 0.13 +0.6
5,586,645 + Psyr_4715 0.13 -0.4
5,586,646 - Psyr_4715 0.13 +0.6
5,586,660 + Psyr_4715 0.13 +0.5
5,586,661 - Psyr_4715 0.13 +0.3
5,586,684 + Psyr_4715 0.14 -0.5
5,586,685 - Psyr_4715 0.14 +0.6
5,586,693 + Psyr_4715 0.14 +0.5
5,586,693 + Psyr_4715 0.14 +1.1
5,586,694 - Psyr_4715 0.14 -0.2
5,586,694 - Psyr_4715 0.14 +0.1
5,586,694 - Psyr_4715 0.14 +1.7
5,586,694 - Psyr_4715 0.14 +1.4
5,586,750 + Psyr_4715 0.16 +1.1
5,586,751 - Psyr_4715 0.16 +0.1
5,587,016 + Psyr_4715 0.25 +0.9
5,587,016 + Psyr_4715 0.25 +0.7
5,587,017 - Psyr_4715 0.25 -0.8
5,587,118 - Psyr_4715 0.28 -0.5
5,587,155 + Psyr_4715 0.30 -0.3
5,587,155 + Psyr_4715 0.30 -0.4
5,587,156 - Psyr_4715 0.30 +2.0
5,587,206 + Psyr_4715 0.31 +0.6
5,587,207 - Psyr_4715 0.31 +1.1
5,587,207 - Psyr_4715 0.31 +1.1
5,587,207 - Psyr_4715 0.31 -1.3
5,587,207 - Psyr_4715 0.31 +1.5
5,587,207 - Psyr_4715 0.31 -1.9

Or see this region's nucleotide sequence