Experiment: KB with Terpene 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4308 and Psyr_4309 are separated by 100 nucleotides Psyr_4309 and Psyr_4310 are separated by 123 nucleotides Psyr_4310 and Psyr_4311 are separated by 50 nucleotides
Psyr_4308: Psyr_4308 - conserved hypothetical protein, at 5,133,734 to 5,135,290
_4308
Psyr_4309: Psyr_4309 - hypothetical protein, at 5,135,391 to 5,136,005
_4309
Psyr_4310: Psyr_4310 - hypothetical protein, at 5,136,129 to 5,137,064
_4310
Psyr_4311: Psyr_4311 - Malonyl CoA-acyl carrier protein transacylase, at 5,137,115 to 5,140,282
_4311
Position (kb) 5136
5137
5138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5135.171 kb on - strand at 5135.171 kb on - strand at 5135.171 kb on - strand at 5135.172 kb on + strand at 5135.172 kb on + strand at 5135.173 kb on - strand at 5135.178 kb on + strand at 5135.178 kb on + strand at 5135.178 kb on + strand at 5135.178 kb on + strand at 5135.179 kb on - strand at 5135.179 kb on - strand at 5135.179 kb on - strand at 5135.189 kb on - strand at 5135.206 kb on + strand at 5135.206 kb on + strand at 5135.206 kb on + strand at 5135.207 kb on - strand at 5135.329 kb on - strand at 5135.341 kb on - strand at 5135.373 kb on + strand at 5135.373 kb on + strand at 5135.374 kb on - strand at 5135.386 kb on + strand at 5135.389 kb on + strand at 5135.390 kb on - strand at 5135.390 kb on - strand at 5135.393 kb on - strand at 5135.393 kb on - strand at 5135.420 kb on - strand at 5135.420 kb on - strand at 5135.421 kb on + strand at 5135.425 kb on - strand at 5135.425 kb on - strand at 5135.425 kb on - strand at 5135.470 kb on - strand, within Psyr_4309 at 5135.555 kb on + strand, within Psyr_4309 at 5135.555 kb on + strand, within Psyr_4309 at 5135.556 kb on - strand, within Psyr_4309 at 5135.639 kb on + strand, within Psyr_4309 at 5135.676 kb on - strand, within Psyr_4309 at 5135.707 kb on - strand, within Psyr_4309 at 5135.746 kb on + strand, within Psyr_4309 at 5135.747 kb on - strand, within Psyr_4309 at 5135.747 kb on - strand, within Psyr_4309 at 5135.751 kb on + strand, within Psyr_4309 at 5135.751 kb on + strand, within Psyr_4309 at 5135.753 kb on + strand, within Psyr_4309 at 5135.753 kb on + strand, within Psyr_4309 at 5135.753 kb on + strand, within Psyr_4309 at 5135.754 kb on - strand, within Psyr_4309 at 5135.754 kb on - strand, within Psyr_4309 at 5135.795 kb on + strand, within Psyr_4309 at 5135.924 kb on + strand, within Psyr_4309 at 5135.925 kb on - strand, within Psyr_4309 at 5135.946 kb on + strand at 5135.947 kb on - strand at 5135.947 kb on - strand at 5135.970 kb on + strand at 5135.971 kb on - strand at 5135.979 kb on + strand at 5136.090 kb on + strand at 5136.091 kb on - strand at 5136.139 kb on + strand at 5136.139 kb on + strand at 5136.140 kb on - strand at 5136.140 kb on - strand at 5136.140 kb on - strand at 5136.144 kb on - strand at 5136.449 kb on + strand, within Psyr_4310 at 5136.466 kb on + strand, within Psyr_4310 at 5136.467 kb on - strand, within Psyr_4310 at 5136.467 kb on - strand, within Psyr_4310 at 5136.518 kb on - strand, within Psyr_4310 at 5136.570 kb on + strand, within Psyr_4310 at 5136.699 kb on - strand, within Psyr_4310 at 5136.724 kb on + strand, within Psyr_4310 at 5136.725 kb on - strand, within Psyr_4310 at 5136.725 kb on - strand, within Psyr_4310 at 5136.725 kb on - strand, within Psyr_4310 at 5136.725 kb on - strand, within Psyr_4310 at 5136.772 kb on + strand, within Psyr_4310 at 5136.772 kb on + strand, within Psyr_4310 at 5136.772 kb on + strand, within Psyr_4310 at 5136.773 kb on - strand, within Psyr_4310 at 5136.773 kb on - strand, within Psyr_4310 at 5136.820 kb on + strand, within Psyr_4310 at 5136.820 kb on + strand, within Psyr_4310 at 5136.820 kb on + strand, within Psyr_4310 at 5136.821 kb on - strand, within Psyr_4310 at 5136.918 kb on + strand, within Psyr_4310 at 5136.918 kb on + strand, within Psyr_4310 at 5136.919 kb on - strand, within Psyr_4310 at 5136.919 kb on - strand, within Psyr_4310 at 5136.919 kb on - strand, within Psyr_4310 at 5136.922 kb on + strand, within Psyr_4310 at 5136.926 kb on - strand, within Psyr_4310 at 5136.986 kb on + strand at 5136.987 kb on - strand at 5137.066 kb on + strand at 5137.070 kb on + strand at 5137.116 kb on + strand at 5137.117 kb on - strand at 5137.117 kb on - strand at 5137.118 kb on + strand at 5137.142 kb on + strand at 5137.142 kb on + strand at 5137.206 kb on + strand at 5137.206 kb on + strand at 5137.207 kb on - strand at 5137.207 kb on - strand at 5137.207 kb on - strand at 5137.207 kb on - strand at 5137.230 kb on - strand at 5137.301 kb on - strand at 5137.308 kb on + strand at 5137.308 kb on + strand at 5137.308 kb on + strand at 5137.308 kb on + strand at 5137.308 kb on + strand at 5137.308 kb on + strand at 5137.308 kb on + strand at 5137.308 kb on + strand at 5137.308 kb on + strand at 5137.308 kb on + strand at 5137.308 kb on + strand at 5137.308 kb on + strand at 5137.308 kb on + strand at 5137.308 kb on + strand at 5137.308 kb on + strand at 5137.308 kb on + strand at 5137.308 kb on + strand at 5137.309 kb on - strand at 5137.309 kb on - strand at 5137.309 kb on - strand at 5137.309 kb on - strand at 5137.309 kb on - strand at 5137.309 kb on - strand at 5137.309 kb on - strand at 5137.342 kb on + strand at 5137.342 kb on + strand at 5137.343 kb on - strand at 5137.362 kb on - strand at 5137.363 kb on + strand at 5137.364 kb on - strand at 5137.425 kb on - strand at 5137.460 kb on + strand, within Psyr_4311 at 5137.460 kb on + strand, within Psyr_4311 at 5137.461 kb on - strand, within Psyr_4311 at 5137.526 kb on + strand, within Psyr_4311 at 5137.527 kb on - strand, within Psyr_4311 at 5137.527 kb on - strand, within Psyr_4311 at 5137.527 kb on - strand, within Psyr_4311 at 5137.529 kb on - strand, within Psyr_4311 at 5137.775 kb on - strand, within Psyr_4311 at 5137.775 kb on - strand, within Psyr_4311 at 5137.778 kb on - strand, within Psyr_4311 at 5137.778 kb on - strand, within Psyr_4311 at 5137.812 kb on + strand, within Psyr_4311 at 5137.813 kb on - strand, within Psyr_4311 at 5137.919 kb on - strand, within Psyr_4311 at 5138.033 kb on + strand, within Psyr_4311 at 5138.034 kb on - strand, within Psyr_4311 at 5138.060 kb on + strand, within Psyr_4311 at 5138.062 kb on + strand, within Psyr_4311 at 5138.062 kb on + strand, within Psyr_4311 at 5138.062 kb on + strand, within Psyr_4311 at 5138.063 kb on - strand, within Psyr_4311 at 5138.063 kb on - strand, within Psyr_4311
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Terpene 10 mM remove 5,135,171 - -0.9 5,135,171 - +0.7 5,135,171 - -1.6 5,135,172 + -1.2 5,135,172 + +0.0 5,135,173 - +0.5 5,135,178 + -1.2 5,135,178 + -1.3 5,135,178 + -0.6 5,135,178 + +0.7 5,135,179 - +0.3 5,135,179 - +0.0 5,135,179 - -0.8 5,135,189 - +0.5 5,135,206 + -0.9 5,135,206 + +0.4 5,135,206 + -0.1 5,135,207 - +2.9 5,135,329 - -0.4 5,135,341 - -0.6 5,135,373 + -0.6 5,135,373 + -1.5 5,135,374 - -1.6 5,135,386 + -2.1 5,135,389 + +0.0 5,135,390 - -0.2 5,135,390 - +1.6 5,135,393 - -1.1 5,135,393 - -0.3 5,135,420 - +1.5 5,135,420 - -0.2 5,135,421 + +1.3 5,135,425 - -2.8 5,135,425 - +0.2 5,135,425 - +1.2 5,135,470 - Psyr_4309 0.13 +0.9 5,135,555 + Psyr_4309 0.27 +0.7 5,135,555 + Psyr_4309 0.27 +0.3 5,135,556 - Psyr_4309 0.27 -2.2 5,135,639 + Psyr_4309 0.40 -1.8 5,135,676 - Psyr_4309 0.46 -2.1 5,135,707 - Psyr_4309 0.51 +3.3 5,135,746 + Psyr_4309 0.58 +0.7 5,135,747 - Psyr_4309 0.58 -1.0 5,135,747 - Psyr_4309 0.58 +1.2 5,135,751 + Psyr_4309 0.59 -0.4 5,135,751 + Psyr_4309 0.59 -1.3 5,135,753 + Psyr_4309 0.59 -1.0 5,135,753 + Psyr_4309 0.59 -0.8 5,135,753 + Psyr_4309 0.59 +0.6 5,135,754 - Psyr_4309 0.59 +1.6 5,135,754 - Psyr_4309 0.59 +0.8 5,135,795 + Psyr_4309 0.66 -0.3 5,135,924 + Psyr_4309 0.87 +1.0 5,135,925 - Psyr_4309 0.87 -1.0 5,135,946 + +0.2 5,135,947 - +0.5 5,135,947 - +0.1 5,135,970 + -0.5 5,135,971 - -0.4 5,135,979 + -1.0 5,136,090 + -2.2 5,136,091 - -2.3 5,136,139 + -0.7 5,136,139 + +1.6 5,136,140 - +0.7 5,136,140 - -1.0 5,136,140 - -1.3 5,136,144 - +4.0 5,136,449 + Psyr_4310 0.34 -2.3 5,136,466 + Psyr_4310 0.36 -0.2 5,136,467 - Psyr_4310 0.36 -0.5 5,136,467 - Psyr_4310 0.36 -1.0 5,136,518 - Psyr_4310 0.42 +0.4 5,136,570 + Psyr_4310 0.47 -0.3 5,136,699 - Psyr_4310 0.61 -0.4 5,136,724 + Psyr_4310 0.64 -1.0 5,136,725 - Psyr_4310 0.64 -0.2 5,136,725 - Psyr_4310 0.64 +0.4 5,136,725 - Psyr_4310 0.64 -1.6 5,136,725 - Psyr_4310 0.64 -0.3 5,136,772 + Psyr_4310 0.69 +0.5 5,136,772 + Psyr_4310 0.69 -0.6 5,136,772 + Psyr_4310 0.69 -1.0 5,136,773 - Psyr_4310 0.69 -0.9 5,136,773 - Psyr_4310 0.69 -1.0 5,136,820 + Psyr_4310 0.74 -1.0 5,136,820 + Psyr_4310 0.74 +0.9 5,136,820 + Psyr_4310 0.74 -0.9 5,136,821 - Psyr_4310 0.74 -1.3 5,136,918 + Psyr_4310 0.84 -2.6 5,136,918 + Psyr_4310 0.84 -0.8 5,136,919 - Psyr_4310 0.84 +0.1 5,136,919 - Psyr_4310 0.84 +0.4 5,136,919 - Psyr_4310 0.84 +1.0 5,136,922 + Psyr_4310 0.85 +0.1 5,136,926 - Psyr_4310 0.85 -0.4 5,136,986 + -0.8 5,136,987 - +0.7 5,137,066 + -1.7 5,137,070 + -0.4 5,137,116 + -0.8 5,137,117 - -0.5 5,137,117 - +0.1 5,137,118 + +1.6 5,137,142 + -0.0 5,137,142 + +0.5 5,137,206 + -0.4 5,137,206 + +2.0 5,137,207 - -0.1 5,137,207 - -1.1 5,137,207 - +0.8 5,137,207 - +0.8 5,137,230 - -2.8 5,137,301 - -1.7 5,137,308 + +0.7 5,137,308 + +0.9 5,137,308 + -1.6 5,137,308 + -1.0 5,137,308 + +1.0 5,137,308 + +2.8 5,137,308 + -1.3 5,137,308 + +1.6 5,137,308 + +0.5 5,137,308 + +0.0 5,137,308 + -0.8 5,137,308 + +0.4 5,137,308 + +0.0 5,137,308 + -1.5 5,137,308 + -1.8 5,137,308 + +0.2 5,137,308 + -0.3 5,137,309 - -3.0 5,137,309 - +1.4 5,137,309 - -1.8 5,137,309 - +1.3 5,137,309 - -0.6 5,137,309 - -2.0 5,137,309 - -0.7 5,137,342 + +0.9 5,137,342 + -2.2 5,137,343 - -2.5 5,137,362 - -1.1 5,137,363 + -0.7 5,137,364 - -1.1 5,137,425 - -0.5 5,137,460 + Psyr_4311 0.11 +0.3 5,137,460 + Psyr_4311 0.11 +1.0 5,137,461 - Psyr_4311 0.11 -2.0 5,137,526 + Psyr_4311 0.13 +0.0 5,137,527 - Psyr_4311 0.13 -0.3 5,137,527 - Psyr_4311 0.13 -1.9 5,137,527 - Psyr_4311 0.13 +0.4 5,137,529 - Psyr_4311 0.13 +0.5 5,137,775 - Psyr_4311 0.21 +0.6 5,137,775 - Psyr_4311 0.21 +1.1 5,137,778 - Psyr_4311 0.21 -0.4 5,137,778 - Psyr_4311 0.21 +1.1 5,137,812 + Psyr_4311 0.22 +0.3 5,137,813 - Psyr_4311 0.22 -0.7 5,137,919 - Psyr_4311 0.25 +0.0 5,138,033 + Psyr_4311 0.29 +1.2 5,138,034 - Psyr_4311 0.29 -1.1 5,138,060 + Psyr_4311 0.30 +0.5 5,138,062 + Psyr_4311 0.30 +0.9 5,138,062 + Psyr_4311 0.30 +3.0 5,138,062 + Psyr_4311 0.30 -0.7 5,138,063 - Psyr_4311 0.30 -0.4 5,138,063 - Psyr_4311 0.30 -0.1
Or see this region's nucleotide sequence