Experiment: KB with Terpene 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3537 and Psyr_3538 are separated by 117 nucleotides Psyr_3538 and Psyr_3539 are separated by 255 nucleotides Psyr_3539 and Psyr_3540 are separated by 59 nucleotides
Psyr_3537: Psyr_3537 - hydrolase, at 4,215,199 to 4,216,062
_3537
Psyr_3538: Psyr_3538 - transcriptional regulator, TetR family, at 4,216,180 to 4,216,782
_3538
Psyr_3539: Psyr_3539 - Short-chain dehydrogenase/reductase SDR, at 4,217,038 to 4,217,826
_3539
Psyr_3540: Psyr_3540 - Zinc-containing alcohol dehydrogenase superfamily, at 4,217,886 to 4,218,887
_3540
Position (kb) 4217
4218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4216.100 kb on + strand at 4216.150 kb on + strand at 4216.150 kb on + strand at 4216.151 kb on - strand at 4216.167 kb on + strand at 4216.167 kb on + strand at 4216.177 kb on + strand at 4216.177 kb on + strand at 4216.177 kb on + strand at 4216.177 kb on + strand at 4216.177 kb on + strand at 4216.178 kb on - strand at 4216.178 kb on - strand at 4216.178 kb on - strand at 4216.178 kb on - strand at 4216.178 kb on - strand at 4216.178 kb on - strand at 4216.178 kb on - strand at 4216.178 kb on - strand at 4216.178 kb on - strand at 4216.178 kb on - strand at 4216.178 kb on - strand at 4216.178 kb on - strand at 4216.207 kb on + strand at 4216.207 kb on + strand at 4216.207 kb on + strand at 4216.208 kb on - strand at 4216.387 kb on + strand, within Psyr_3538 at 4216.388 kb on - strand, within Psyr_3538 at 4216.388 kb on - strand, within Psyr_3538 at 4216.462 kb on + strand, within Psyr_3538 at 4216.462 kb on + strand, within Psyr_3538 at 4216.463 kb on - strand, within Psyr_3538 at 4216.463 kb on - strand, within Psyr_3538 at 4216.463 kb on - strand, within Psyr_3538 at 4216.466 kb on + strand, within Psyr_3538 at 4216.466 kb on + strand, within Psyr_3538 at 4216.466 kb on + strand, within Psyr_3538 at 4216.466 kb on + strand, within Psyr_3538 at 4216.467 kb on - strand, within Psyr_3538 at 4216.467 kb on - strand, within Psyr_3538 at 4216.467 kb on - strand, within Psyr_3538 at 4216.467 kb on - strand, within Psyr_3538 at 4216.467 kb on - strand, within Psyr_3538 at 4216.520 kb on + strand, within Psyr_3538 at 4216.520 kb on + strand, within Psyr_3538 at 4216.521 kb on - strand, within Psyr_3538 at 4216.545 kb on + strand, within Psyr_3538 at 4216.545 kb on + strand, within Psyr_3538 at 4216.545 kb on + strand, within Psyr_3538 at 4216.546 kb on - strand, within Psyr_3538 at 4216.546 kb on - strand, within Psyr_3538 at 4216.560 kb on + strand, within Psyr_3538 at 4216.561 kb on - strand, within Psyr_3538 at 4216.561 kb on - strand, within Psyr_3538 at 4216.610 kb on - strand, within Psyr_3538 at 4216.691 kb on + strand, within Psyr_3538 at 4216.792 kb on + strand at 4217.022 kb on + strand at 4217.023 kb on - strand at 4217.023 kb on - strand at 4217.028 kb on + strand at 4217.028 kb on + strand at 4217.028 kb on + strand at 4217.028 kb on + strand at 4217.028 kb on + strand at 4217.028 kb on + strand at 4217.029 kb on - strand at 4217.029 kb on - strand at 4217.029 kb on - strand at 4217.029 kb on - strand at 4217.029 kb on - strand at 4217.029 kb on - strand at 4217.029 kb on - strand at 4217.093 kb on + strand at 4217.093 kb on + strand at 4217.093 kb on + strand at 4217.093 kb on + strand at 4217.093 kb on + strand at 4217.094 kb on - strand at 4217.094 kb on - strand at 4217.094 kb on - strand at 4217.094 kb on - strand at 4217.095 kb on + strand at 4217.095 kb on + strand at 4217.096 kb on - strand at 4217.096 kb on - strand at 4217.096 kb on - strand at 4217.096 kb on - strand at 4217.096 kb on - strand at 4217.512 kb on + strand, within Psyr_3539 at 4217.512 kb on + strand, within Psyr_3539 at 4217.512 kb on + strand, within Psyr_3539 at 4217.512 kb on + strand, within Psyr_3539 at 4217.513 kb on - strand, within Psyr_3539 at 4217.513 kb on - strand, within Psyr_3539 at 4217.513 kb on - strand, within Psyr_3539 at 4217.513 kb on - strand, within Psyr_3539 at 4217.513 kb on - strand, within Psyr_3539 at 4217.513 kb on - strand, within Psyr_3539 at 4217.513 kb on - strand, within Psyr_3539 at 4217.513 kb on - strand, within Psyr_3539 at 4217.565 kb on - strand, within Psyr_3539 at 4217.566 kb on + strand, within Psyr_3539 at 4217.566 kb on + strand, within Psyr_3539 at 4217.566 kb on + strand, within Psyr_3539 at 4217.566 kb on + strand, within Psyr_3539 at 4217.566 kb on + strand, within Psyr_3539 at 4217.566 kb on + strand, within Psyr_3539 at 4217.567 kb on - strand, within Psyr_3539 at 4217.567 kb on - strand, within Psyr_3539 at 4217.567 kb on - strand, within Psyr_3539 at 4217.567 kb on - strand, within Psyr_3539 at 4217.567 kb on - strand, within Psyr_3539 at 4217.567 kb on - strand, within Psyr_3539 at 4217.567 kb on - strand, within Psyr_3539 at 4217.567 kb on - strand, within Psyr_3539 at 4217.567 kb on - strand, within Psyr_3539 at 4217.567 kb on - strand, within Psyr_3539 at 4217.567 kb on - strand, within Psyr_3539 at 4217.567 kb on - strand, within Psyr_3539 at 4217.637 kb on + strand, within Psyr_3539 at 4217.637 kb on + strand, within Psyr_3539 at 4217.637 kb on + strand, within Psyr_3539 at 4217.637 kb on + strand, within Psyr_3539 at 4217.638 kb on - strand, within Psyr_3539 at 4217.638 kb on - strand, within Psyr_3539 at 4217.910 kb on + strand at 4218.275 kb on + strand, within Psyr_3540 at 4218.275 kb on + strand, within Psyr_3540 at 4218.425 kb on + strand, within Psyr_3540 at 4218.425 kb on + strand, within Psyr_3540 at 4218.425 kb on + strand, within Psyr_3540 at 4218.425 kb on + strand, within Psyr_3540 at 4218.426 kb on - strand, within Psyr_3540 at 4218.468 kb on + strand, within Psyr_3540 at 4218.469 kb on - strand, within Psyr_3540 at 4218.583 kb on + strand, within Psyr_3540 at 4218.583 kb on + strand, within Psyr_3540 at 4218.584 kb on - strand, within Psyr_3540 at 4218.584 kb on - strand, within Psyr_3540 at 4218.653 kb on - strand, within Psyr_3540 at 4218.709 kb on - strand, within Psyr_3540
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Terpene 10 mM remove 4,216,100 + +2.2 4,216,150 + +2.5 4,216,150 + +0.2 4,216,151 - +0.6 4,216,167 + +0.2 4,216,167 + -0.5 4,216,177 + +0.9 4,216,177 + +1.0 4,216,177 + +2.5 4,216,177 + -0.5 4,216,177 + -2.2 4,216,178 - -0.1 4,216,178 - -0.4 4,216,178 - +0.1 4,216,178 - -0.5 4,216,178 - +0.2 4,216,178 - -0.1 4,216,178 - +0.1 4,216,178 - -0.2 4,216,178 - -1.5 4,216,178 - +0.9 4,216,178 - -0.3 4,216,178 - -0.3 4,216,207 + +0.2 4,216,207 + -0.8 4,216,207 + +0.9 4,216,208 - -0.0 4,216,387 + Psyr_3538 0.34 +0.2 4,216,388 - Psyr_3538 0.34 -0.3 4,216,388 - Psyr_3538 0.34 +0.4 4,216,462 + Psyr_3538 0.47 -0.2 4,216,462 + Psyr_3538 0.47 +1.5 4,216,463 - Psyr_3538 0.47 -0.1 4,216,463 - Psyr_3538 0.47 +0.4 4,216,463 - Psyr_3538 0.47 +0.6 4,216,466 + Psyr_3538 0.47 -0.8 4,216,466 + Psyr_3538 0.47 +0.6 4,216,466 + Psyr_3538 0.47 +1.3 4,216,466 + Psyr_3538 0.47 +0.0 4,216,467 - Psyr_3538 0.48 +0.3 4,216,467 - Psyr_3538 0.48 -0.9 4,216,467 - Psyr_3538 0.48 +0.1 4,216,467 - Psyr_3538 0.48 -0.3 4,216,467 - Psyr_3538 0.48 -1.0 4,216,520 + Psyr_3538 0.56 -2.2 4,216,520 + Psyr_3538 0.56 +1.4 4,216,521 - Psyr_3538 0.57 -0.4 4,216,545 + Psyr_3538 0.61 -2.0 4,216,545 + Psyr_3538 0.61 +1.6 4,216,545 + Psyr_3538 0.61 +0.2 4,216,546 - Psyr_3538 0.61 +0.9 4,216,546 - Psyr_3538 0.61 +0.9 4,216,560 + Psyr_3538 0.63 +0.1 4,216,561 - Psyr_3538 0.63 -0.7 4,216,561 - Psyr_3538 0.63 +1.3 4,216,610 - Psyr_3538 0.71 -1.5 4,216,691 + Psyr_3538 0.85 -0.0 4,216,792 + -0.9 4,217,022 + -0.3 4,217,023 - -0.4 4,217,023 - +0.5 4,217,028 + -0.7 4,217,028 + +0.9 4,217,028 + +0.6 4,217,028 + -0.2 4,217,028 + +0.5 4,217,028 + -0.3 4,217,029 - -0.3 4,217,029 - +0.6 4,217,029 - -0.4 4,217,029 - +0.3 4,217,029 - +1.2 4,217,029 - -0.3 4,217,029 - -0.5 4,217,093 + -0.5 4,217,093 + +0.0 4,217,093 + -0.0 4,217,093 + +0.1 4,217,093 + -1.9 4,217,094 - -1.9 4,217,094 - +0.1 4,217,094 - -2.7 4,217,094 - +0.3 4,217,095 + -0.7 4,217,095 + -0.9 4,217,096 - -0.3 4,217,096 - +1.2 4,217,096 - -0.4 4,217,096 - -0.6 4,217,096 - -0.9 4,217,512 + Psyr_3539 0.60 +0.6 4,217,512 + Psyr_3539 0.60 -1.3 4,217,512 + Psyr_3539 0.60 -0.2 4,217,512 + Psyr_3539 0.60 +0.9 4,217,513 - Psyr_3539 0.60 -0.7 4,217,513 - Psyr_3539 0.60 -2.4 4,217,513 - Psyr_3539 0.60 -1.3 4,217,513 - Psyr_3539 0.60 +1.5 4,217,513 - Psyr_3539 0.60 +0.5 4,217,513 - Psyr_3539 0.60 -0.0 4,217,513 - Psyr_3539 0.60 -0.1 4,217,513 - Psyr_3539 0.60 +0.1 4,217,565 - Psyr_3539 0.67 -0.2 4,217,566 + Psyr_3539 0.67 +1.8 4,217,566 + Psyr_3539 0.67 -1.3 4,217,566 + Psyr_3539 0.67 +1.9 4,217,566 + Psyr_3539 0.67 -0.5 4,217,566 + Psyr_3539 0.67 -0.3 4,217,566 + Psyr_3539 0.67 +0.2 4,217,567 - Psyr_3539 0.67 -1.1 4,217,567 - Psyr_3539 0.67 -2.7 4,217,567 - Psyr_3539 0.67 +0.2 4,217,567 - Psyr_3539 0.67 -1.2 4,217,567 - Psyr_3539 0.67 +0.2 4,217,567 - Psyr_3539 0.67 -1.4 4,217,567 - Psyr_3539 0.67 +1.1 4,217,567 - Psyr_3539 0.67 -2.2 4,217,567 - Psyr_3539 0.67 +4.2 4,217,567 - Psyr_3539 0.67 -1.5 4,217,567 - Psyr_3539 0.67 -3.7 4,217,567 - Psyr_3539 0.67 +0.4 4,217,637 + Psyr_3539 0.76 -1.5 4,217,637 + Psyr_3539 0.76 +0.2 4,217,637 + Psyr_3539 0.76 -0.8 4,217,637 + Psyr_3539 0.76 -0.5 4,217,638 - Psyr_3539 0.76 +0.8 4,217,638 - Psyr_3539 0.76 +0.1 4,217,910 + +1.1 4,218,275 + Psyr_3540 0.39 +2.5 4,218,275 + Psyr_3540 0.39 +0.1 4,218,425 + Psyr_3540 0.54 -0.4 4,218,425 + Psyr_3540 0.54 -0.7 4,218,425 + Psyr_3540 0.54 +0.4 4,218,425 + Psyr_3540 0.54 +2.5 4,218,426 - Psyr_3540 0.54 -0.3 4,218,468 + Psyr_3540 0.58 +1.9 4,218,469 - Psyr_3540 0.58 +1.2 4,218,583 + Psyr_3540 0.70 +0.6 4,218,583 + Psyr_3540 0.70 +0.3 4,218,584 - Psyr_3540 0.70 +0.7 4,218,584 - Psyr_3540 0.70 +0.4 4,218,653 - Psyr_3540 0.77 -0.7 4,218,709 - Psyr_3540 0.82 -0.1
Or see this region's nucleotide sequence