Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0813

Experiment: KB with Terpene 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0811 and Psyr_0812 are separated by 27 nucleotidesPsyr_0812 and Psyr_0813 are separated by 37 nucleotidesPsyr_0813 and Psyr_0814 are separated by 209 nucleotides Psyr_0811: Psyr_0811 - Integral membrane protein TerC, at 915,949 to 916,983 _0811 Psyr_0812: Psyr_0812 - stress protein, at 917,011 to 917,586 _0812 Psyr_0813: Psyr_0813 - stress protein, at 917,624 to 918,202 _0813 Psyr_0814: Psyr_0814 - Protein of unknown function DUF124, at 918,412 to 919,287 _0814 Position (kb) 917 918 919Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 916.747 kb on + strand, within Psyr_0811at 916.747 kb on + strand, within Psyr_0811at 916.747 kb on + strand, within Psyr_0811at 916.748 kb on - strand, within Psyr_0811at 916.748 kb on - strand, within Psyr_0811at 916.748 kb on - strand, within Psyr_0811at 916.846 kb on - strand, within Psyr_0811at 917.078 kb on + strand, within Psyr_0812at 917.078 kb on + strand, within Psyr_0812at 917.078 kb on + strand, within Psyr_0812at 917.079 kb on - strand, within Psyr_0812at 917.197 kb on + strand, within Psyr_0812at 917.197 kb on + strand, within Psyr_0812at 917.402 kb on + strand, within Psyr_0812at 917.492 kb on - strand, within Psyr_0812at 917.549 kb on + strandat 917.550 kb on - strandat 917.631 kb on + strandat 917.631 kb on + strandat 917.632 kb on - strandat 917.632 kb on - strandat 917.641 kb on + strandat 917.697 kb on + strand, within Psyr_0813at 917.698 kb on - strand, within Psyr_0813at 917.810 kb on + strand, within Psyr_0813at 917.810 kb on + strand, within Psyr_0813at 918.005 kb on + strand, within Psyr_0813at 918.005 kb on + strand, within Psyr_0813at 918.005 kb on + strand, within Psyr_0813at 918.005 kb on + strand, within Psyr_0813at 918.005 kb on + strand, within Psyr_0813at 918.005 kb on + strand, within Psyr_0813at 918.005 kb on + strand, within Psyr_0813at 918.005 kb on + strand, within Psyr_0813at 918.006 kb on - strand, within Psyr_0813at 918.006 kb on - strand, within Psyr_0813at 918.006 kb on - strand, within Psyr_0813at 918.006 kb on - strand, within Psyr_0813at 918.006 kb on - strand, within Psyr_0813at 918.006 kb on - strand, within Psyr_0813at 918.104 kb on + strand, within Psyr_0813at 918.104 kb on + strand, within Psyr_0813at 918.253 kb on + strandat 918.393 kb on + strandat 918.393 kb on + strandat 918.393 kb on + strandat 918.393 kb on + strandat 918.394 kb on - strandat 918.394 kb on - strandat 918.394 kb on - strandat 918.401 kb on + strandat 918.401 kb on + strandat 918.401 kb on + strandat 918.402 kb on - strandat 918.402 kb on - strandat 918.402 kb on - strandat 918.431 kb on - strandat 918.587 kb on + strand, within Psyr_0814at 918.588 kb on - strand, within Psyr_0814at 919.052 kb on + strand, within Psyr_0814at 919.052 kb on + strand, within Psyr_0814at 919.052 kb on + strand, within Psyr_0814at 919.052 kb on + strand, within Psyr_0814at 919.052 kb on + strand, within Psyr_0814at 919.052 kb on + strand, within Psyr_0814at 919.052 kb on + strand, within Psyr_0814at 919.052 kb on + strand, within Psyr_0814at 919.052 kb on + strand, within Psyr_0814at 919.052 kb on + strand, within Psyr_0814at 919.053 kb on - strand, within Psyr_0814at 919.053 kb on - strand, within Psyr_0814at 919.053 kb on - strand, within Psyr_0814at 919.053 kb on - strand, within Psyr_0814at 919.053 kb on - strand, within Psyr_0814at 919.053 kb on - strand, within Psyr_0814at 919.053 kb on - strand, within Psyr_0814at 919.053 kb on - strand, within Psyr_0814at 919.130 kb on + strand, within Psyr_0814at 919.131 kb on - strand, within Psyr_0814at 919.173 kb on - strand, within Psyr_0814at 919.200 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Terpene 10 mM
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916,747 + Psyr_0811 0.77 -0.7
916,747 + Psyr_0811 0.77 -0.2
916,747 + Psyr_0811 0.77 +0.8
916,748 - Psyr_0811 0.77 +0.4
916,748 - Psyr_0811 0.77 +0.4
916,748 - Psyr_0811 0.77 +0.6
916,846 - Psyr_0811 0.87 -1.0
917,078 + Psyr_0812 0.12 +0.3
917,078 + Psyr_0812 0.12 +0.7
917,078 + Psyr_0812 0.12 -0.9
917,079 - Psyr_0812 0.12 -0.5
917,197 + Psyr_0812 0.32 -1.1
917,197 + Psyr_0812 0.32 +0.9
917,402 + Psyr_0812 0.68 -0.2
917,492 - Psyr_0812 0.84 +0.1
917,549 + +0.7
917,550 - -1.1
917,631 + -0.3
917,631 + -0.1
917,632 - -2.0
917,632 - +0.5
917,641 + +0.8
917,697 + Psyr_0813 0.13 +0.5
917,698 - Psyr_0813 0.13 +0.9
917,810 + Psyr_0813 0.32 +1.9
917,810 + Psyr_0813 0.32 +0.7
918,005 + Psyr_0813 0.66 +0.1
918,005 + Psyr_0813 0.66 +0.7
918,005 + Psyr_0813 0.66 -0.0
918,005 + Psyr_0813 0.66 -3.6
918,005 + Psyr_0813 0.66 -3.0
918,005 + Psyr_0813 0.66 +0.7
918,005 + Psyr_0813 0.66 +0.3
918,005 + Psyr_0813 0.66 +1.1
918,006 - Psyr_0813 0.66 -0.6
918,006 - Psyr_0813 0.66 +1.9
918,006 - Psyr_0813 0.66 +0.8
918,006 - Psyr_0813 0.66 -0.8
918,006 - Psyr_0813 0.66 +1.2
918,006 - Psyr_0813 0.66 +2.0
918,104 + Psyr_0813 0.83 -0.2
918,104 + Psyr_0813 0.83 +0.6
918,253 + -0.0
918,393 + +0.3
918,393 + -0.9
918,393 + -0.3
918,393 + -0.6
918,394 - -0.7
918,394 - +0.4
918,394 - -0.8
918,401 + +0.6
918,401 + -0.3
918,401 + -0.8
918,402 - -0.7
918,402 - -0.1
918,402 - +1.4
918,431 - +0.5
918,587 + Psyr_0814 0.20 +0.7
918,588 - Psyr_0814 0.20 +1.7
919,052 + Psyr_0814 0.73 -0.2
919,052 + Psyr_0814 0.73 -1.3
919,052 + Psyr_0814 0.73 -1.2
919,052 + Psyr_0814 0.73 +0.2
919,052 + Psyr_0814 0.73 +0.1
919,052 + Psyr_0814 0.73 +0.4
919,052 + Psyr_0814 0.73 -0.0
919,052 + Psyr_0814 0.73 -0.7
919,052 + Psyr_0814 0.73 +0.7
919,052 + Psyr_0814 0.73 -0.4
919,053 - Psyr_0814 0.73 +0.1
919,053 - Psyr_0814 0.73 +0.2
919,053 - Psyr_0814 0.73 +0.1
919,053 - Psyr_0814 0.73 -1.4
919,053 - Psyr_0814 0.73 -0.6
919,053 - Psyr_0814 0.73 -0.7
919,053 - Psyr_0814 0.73 -1.6
919,053 - Psyr_0814 0.73 -0.1
919,130 + Psyr_0814 0.82 -0.8
919,131 - Psyr_0814 0.82 -0.9
919,173 - Psyr_0814 0.87 -2.4
919,200 + +0.8

Or see this region's nucleotide sequence