Experiment: KB with Terpene 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0781 and Psyr_0782 overlap by 38 nucleotides Psyr_0782 and Psyr_0783 overlap by 4 nucleotides Psyr_0783 and Psyr_0784 are separated by 9 nucleotides Psyr_0784 and Psyr_0785 are separated by 36 nucleotides
Psyr_0781: Psyr_0781 - Protein-glutamate methylesterase, at 887,924 to 889,000
_0781
Psyr_0782: Psyr_0782 - CheD, at 888,963 to 889,496
_0782
Psyr_0783: Psyr_0783 - MCP methyltransferase, CheR-type, at 889,493 to 890,302
_0783
Psyr_0784: Psyr_0784 - CheW-like protein, at 890,312 to 890,851
_0784
Psyr_0785: Psyr_0785 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 890,888 to 892,543
_0785
Position (kb) 889
890
891 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 888.615 kb on - strand, within Psyr_0781 at 888.911 kb on - strand at 888.942 kb on - strand at 888.942 kb on - strand at 888.953 kb on + strand at 888.953 kb on + strand at 888.953 kb on + strand at 888.953 kb on + strand at 888.954 kb on - strand at 888.954 kb on - strand at 888.954 kb on - strand at 888.977 kb on + strand at 888.978 kb on - strand at 888.978 kb on - strand at 889.038 kb on + strand, within Psyr_0782 at 889.038 kb on + strand, within Psyr_0782 at 889.038 kb on + strand, within Psyr_0782 at 889.038 kb on + strand, within Psyr_0782 at 889.039 kb on - strand, within Psyr_0782 at 889.039 kb on - strand, within Psyr_0782 at 889.039 kb on - strand, within Psyr_0782 at 889.039 kb on - strand, within Psyr_0782 at 889.231 kb on + strand, within Psyr_0782 at 889.275 kb on + strand, within Psyr_0782 at 889.275 kb on + strand, within Psyr_0782 at 889.276 kb on - strand, within Psyr_0782 at 889.276 kb on - strand, within Psyr_0782 at 889.276 kb on - strand, within Psyr_0782 at 889.276 kb on - strand, within Psyr_0782 at 889.297 kb on + strand, within Psyr_0782 at 889.297 kb on + strand, within Psyr_0782 at 889.297 kb on + strand, within Psyr_0782 at 889.297 kb on + strand, within Psyr_0782 at 889.298 kb on - strand, within Psyr_0782 at 889.298 kb on - strand, within Psyr_0782 at 889.298 kb on - strand, within Psyr_0782 at 889.327 kb on - strand, within Psyr_0782 at 889.339 kb on - strand, within Psyr_0782 at 889.389 kb on - strand, within Psyr_0782 at 889.467 kb on + strand at 889.467 kb on + strand at 889.468 kb on - strand at 889.468 kb on - strand at 889.468 kb on - strand at 889.578 kb on + strand, within Psyr_0783 at 889.578 kb on + strand, within Psyr_0783 at 889.579 kb on - strand, within Psyr_0783 at 889.579 kb on - strand, within Psyr_0783 at 889.579 kb on - strand, within Psyr_0783 at 889.579 kb on - strand, within Psyr_0783 at 889.644 kb on + strand, within Psyr_0783 at 889.644 kb on + strand, within Psyr_0783 at 889.645 kb on - strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.795 kb on - strand, within Psyr_0783 at 889.795 kb on - strand, within Psyr_0783 at 889.795 kb on - strand, within Psyr_0783 at 889.948 kb on - strand, within Psyr_0783 at 890.064 kb on + strand, within Psyr_0783 at 890.065 kb on - strand, within Psyr_0783 at 890.065 kb on - strand, within Psyr_0783 at 890.065 kb on - strand, within Psyr_0783 at 890.142 kb on + strand, within Psyr_0783 at 890.143 kb on - strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.152 kb on - strand, within Psyr_0783 at 890.152 kb on - strand, within Psyr_0783 at 890.166 kb on + strand, within Psyr_0783 at 890.166 kb on + strand, within Psyr_0783 at 890.167 kb on - strand, within Psyr_0783 at 890.244 kb on + strand at 890.244 kb on + strand at 890.244 kb on + strand at 890.245 kb on - strand at 890.245 kb on - strand at 890.294 kb on - strand at 890.294 kb on - strand at 890.724 kb on + strand, within Psyr_0784 at 890.724 kb on + strand, within Psyr_0784 at 891.106 kb on + strand, within Psyr_0785
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Terpene 10 mM remove 888,615 - Psyr_0781 0.64 +0.3 888,911 - +1.3 888,942 - -1.1 888,942 - -0.5 888,953 + +3.9 888,953 + +0.8 888,953 + -0.1 888,953 + -1.2 888,954 - -1.3 888,954 - +1.0 888,954 - -2.5 888,977 + -0.6 888,978 - -0.2 888,978 - -0.1 889,038 + Psyr_0782 0.14 +0.9 889,038 + Psyr_0782 0.14 -1.3 889,038 + Psyr_0782 0.14 -0.3 889,038 + Psyr_0782 0.14 -0.2 889,039 - Psyr_0782 0.14 -0.3 889,039 - Psyr_0782 0.14 -2.5 889,039 - Psyr_0782 0.14 -0.5 889,039 - Psyr_0782 0.14 -0.1 889,231 + Psyr_0782 0.50 -0.4 889,275 + Psyr_0782 0.58 +1.7 889,275 + Psyr_0782 0.58 -2.0 889,276 - Psyr_0782 0.59 -0.2 889,276 - Psyr_0782 0.59 -0.5 889,276 - Psyr_0782 0.59 -1.5 889,276 - Psyr_0782 0.59 -1.0 889,297 + Psyr_0782 0.63 -0.5 889,297 + Psyr_0782 0.63 +0.0 889,297 + Psyr_0782 0.63 -0.1 889,297 + Psyr_0782 0.63 +1.1 889,298 - Psyr_0782 0.63 -0.4 889,298 - Psyr_0782 0.63 -1.5 889,298 - Psyr_0782 0.63 -0.5 889,327 - Psyr_0782 0.68 -0.2 889,339 - Psyr_0782 0.70 +0.8 889,389 - Psyr_0782 0.80 +1.5 889,467 + +0.9 889,467 + +0.8 889,468 - -3.4 889,468 - -0.3 889,468 - +0.2 889,578 + Psyr_0783 0.10 +0.3 889,578 + Psyr_0783 0.10 -0.2 889,579 - Psyr_0783 0.11 +1.2 889,579 - Psyr_0783 0.11 +0.1 889,579 - Psyr_0783 0.11 -0.5 889,579 - Psyr_0783 0.11 +0.7 889,644 + Psyr_0783 0.19 +0.2 889,644 + Psyr_0783 0.19 +0.4 889,645 - Psyr_0783 0.19 -0.1 889,794 + Psyr_0783 0.37 +0.7 889,794 + Psyr_0783 0.37 +0.3 889,794 + Psyr_0783 0.37 -0.8 889,794 + Psyr_0783 0.37 +1.8 889,794 + Psyr_0783 0.37 -0.5 889,795 - Psyr_0783 0.37 +0.5 889,795 - Psyr_0783 0.37 +0.3 889,795 - Psyr_0783 0.37 +1.1 889,948 - Psyr_0783 0.56 +0.5 890,064 + Psyr_0783 0.70 -0.3 890,065 - Psyr_0783 0.71 +0.9 890,065 - Psyr_0783 0.71 +0.2 890,065 - Psyr_0783 0.71 +0.9 890,142 + Psyr_0783 0.80 +0.2 890,143 - Psyr_0783 0.80 -0.5 890,151 + Psyr_0783 0.81 -2.8 890,151 + Psyr_0783 0.81 -0.7 890,151 + Psyr_0783 0.81 +0.3 890,151 + Psyr_0783 0.81 +1.0 890,152 - Psyr_0783 0.81 +2.3 890,152 - Psyr_0783 0.81 -2.5 890,166 + Psyr_0783 0.83 +0.7 890,166 + Psyr_0783 0.83 +1.0 890,167 - Psyr_0783 0.83 +0.5 890,244 + -0.5 890,244 + -0.5 890,244 + +0.8 890,245 - -0.6 890,245 - +0.0 890,294 - +0.3 890,294 - +0.9 890,724 + Psyr_0784 0.76 -0.6 890,724 + Psyr_0784 0.76 +0.0 891,106 + Psyr_0785 0.13 +0.3
Or see this region's nucleotide sequence