Experiment: Taped volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01120 and HSERO_RS01125 are separated by 28 nucleotides HSERO_RS01125 and HSERO_RS01130 are separated by 81 nucleotides HSERO_RS01130 and HSERO_RS01135 overlap by 4 nucleotides HSERO_RS01135 and HSERO_RS01140 overlap by 4 nucleotides HSERO_RS01140 and HSERO_RS01145 are separated by 46 nucleotides
HSERO_RS01120: HSERO_RS01120 - hypothetical protein, at 235,126 to 236,010
_RS01120
HSERO_RS01125: HSERO_RS01125 - bacteriophage transcription regulator protein, at 236,039 to 236,407
_RS01125
HSERO_RS01130: HSERO_RS01130 - hypothetical protein, at 236,489 to 236,929
_RS01130
HSERO_RS01135: HSERO_RS01135 - hypothetical protein, at 236,926 to 237,348
_RS01135
HSERO_RS01140: HSERO_RS01140 - phage tail protein, at 237,345 to 237,704
_RS01140
HSERO_RS01145: HSERO_RS01145 - inner membrane protein, at 237,751 to 238,032
_RS01145
Position (kb) 236
237 Strain fitness (log2 ratio) -2
-1
0
1
2 at 235.541 kb on + strand, within HSERO_RS01120 at 235.860 kb on + strand, within HSERO_RS01120 at 235.860 kb on + strand, within HSERO_RS01120 at 235.945 kb on + strand at 235.945 kb on + strand at 236.033 kb on - strand at 236.138 kb on - strand, within HSERO_RS01125 at 236.213 kb on - strand, within HSERO_RS01125 at 236.301 kb on + strand at 236.327 kb on - strand, within HSERO_RS01125 at 236.404 kb on - strand at 236.410 kb on - strand at 236.540 kb on + strand, within HSERO_RS01130 at 236.600 kb on - strand, within HSERO_RS01130 at 236.633 kb on + strand, within HSERO_RS01130 at 236.633 kb on + strand, within HSERO_RS01130 at 236.695 kb on + strand, within HSERO_RS01130 at 236.811 kb on + strand, within HSERO_RS01130 at 236.819 kb on - strand at 236.828 kb on - strand, within HSERO_RS01130 at 236.990 kb on - strand, within HSERO_RS01135 at 236.990 kb on - strand, within HSERO_RS01135 at 237.026 kb on - strand, within HSERO_RS01135 at 237.092 kb on + strand at 237.101 kb on - strand, within HSERO_RS01135 at 237.173 kb on + strand, within HSERO_RS01135 at 237.173 kb on + strand, within HSERO_RS01135 at 237.196 kb on - strand, within HSERO_RS01135 at 237.210 kb on + strand, within HSERO_RS01135 at 237.218 kb on - strand, within HSERO_RS01135 at 237.502 kb on + strand, within HSERO_RS01140 at 237.510 kb on - strand, within HSERO_RS01140 at 237.650 kb on - strand, within HSERO_RS01140 at 237.688 kb on - strand at 237.876 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Taped volatile agar plate with no fungus remove 235,541 + HSERO_RS01120 0.47 -1.2 235,860 + HSERO_RS01120 0.83 +0.1 235,860 + HSERO_RS01120 0.83 -2.1 235,945 + +1.3 235,945 + -2.0 236,033 - -0.5 236,138 - HSERO_RS01125 0.27 -1.3 236,213 - HSERO_RS01125 0.47 -0.5 236,301 + +1.3 236,327 - HSERO_RS01125 0.78 +0.3 236,404 - +0.0 236,410 - +0.5 236,540 + HSERO_RS01130 0.12 +2.5 236,600 - HSERO_RS01130 0.25 +0.3 236,633 + HSERO_RS01130 0.33 -1.9 236,633 + HSERO_RS01130 0.33 -0.2 236,695 + HSERO_RS01130 0.47 +1.2 236,811 + HSERO_RS01130 0.73 -0.2 236,819 - -1.5 236,828 - HSERO_RS01130 0.77 +2.5 236,990 - HSERO_RS01135 0.15 -0.7 236,990 - HSERO_RS01135 0.15 +1.2 237,026 - HSERO_RS01135 0.24 +0.0 237,092 + +2.3 237,101 - HSERO_RS01135 0.41 -0.5 237,173 + HSERO_RS01135 0.58 -0.4 237,173 + HSERO_RS01135 0.58 +0.0 237,196 - HSERO_RS01135 0.64 -0.2 237,210 + HSERO_RS01135 0.67 +0.6 237,218 - HSERO_RS01135 0.69 +0.2 237,502 + HSERO_RS01140 0.44 +0.0 237,510 - HSERO_RS01140 0.46 -2.0 237,650 - HSERO_RS01140 0.85 +0.4 237,688 - +0.4 237,876 + -0.5
Or see this region's nucleotide sequence