Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21695

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21685 and ABZR87_RS21690 are separated by 96 nucleotidesABZR87_RS21690 and ABZR87_RS21695 are separated by 154 nucleotidesABZR87_RS21695 and ABZR87_RS21700 are separated by 37 nucleotidesABZR87_RS21700 and ABZR87_RS21705 are separated by 35 nucleotides ABZR87_RS21685: ABZR87_RS21685 - MFS transporter, at 1,249,879 to 1,251,324 _RS21685 ABZR87_RS21690: ABZR87_RS21690 - HIT family protein, at 1,251,421 to 1,251,855 _RS21690 ABZR87_RS21695: ABZR87_RS21695 - PadR family transcriptional regulator, at 1,252,010 to 1,252,639 _RS21695 ABZR87_RS21700: ABZR87_RS21700 - hypothetical protein, at 1,252,677 to 1,252,856 _RS21700 ABZR87_RS21705: ABZR87_RS21705 - CusA/CzcA family heavy metal efflux RND transporter, at 1,252,892 to 1,256,062 _RS21705 Position (kb) 1252 1253Strain fitness (log2 ratio) -2 -1 0 1at 1251.106 kb on + strand, within ABZR87_RS21685at 1251.106 kb on + strand, within ABZR87_RS21685at 1251.106 kb on + strand, within ABZR87_RS21685at 1251.107 kb on - strand, within ABZR87_RS21685at 1251.168 kb on + strand, within ABZR87_RS21685at 1251.168 kb on + strand, within ABZR87_RS21685at 1251.199 kb on + strandat 1251.332 kb on + strandat 1251.366 kb on + strandat 1251.366 kb on + strandat 1251.367 kb on - strandat 1251.368 kb on + strandat 1251.368 kb on + strandat 1251.368 kb on + strandat 1251.369 kb on - strandat 1251.369 kb on - strandat 1251.370 kb on + strandat 1251.370 kb on + strandat 1251.371 kb on - strandat 1251.371 kb on - strandat 1251.371 kb on - strandat 1251.371 kb on - strandat 1251.371 kb on - strandat 1251.371 kb on - strandat 1251.371 kb on - strandat 1251.406 kb on + strandat 1251.436 kb on + strandat 1251.497 kb on - strand, within ABZR87_RS21690at 1251.497 kb on - strand, within ABZR87_RS21690at 1251.854 kb on - strandat 1251.854 kb on - strandat 1252.080 kb on - strand, within ABZR87_RS21695at 1252.136 kb on + strand, within ABZR87_RS21695at 1252.148 kb on + strand, within ABZR87_RS21695at 1252.148 kb on + strand, within ABZR87_RS21695at 1252.149 kb on - strand, within ABZR87_RS21695at 1252.235 kb on + strand, within ABZR87_RS21695at 1252.310 kb on + strand, within ABZR87_RS21695at 1252.311 kb on - strand, within ABZR87_RS21695at 1252.311 kb on - strand, within ABZR87_RS21695at 1252.311 kb on - strand, within ABZR87_RS21695at 1252.311 kb on - strand, within ABZR87_RS21695at 1252.311 kb on - strand, within ABZR87_RS21695at 1252.333 kb on - strand, within ABZR87_RS21695at 1252.764 kb on + strand, within ABZR87_RS21700at 1252.765 kb on - strand, within ABZR87_RS21700at 1252.954 kb on - strandat 1252.966 kb on - strandat 1253.150 kb on + strandat 1253.150 kb on + strandat 1253.278 kb on + strand, within ABZR87_RS21705

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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1,251,106 + ABZR87_RS21685 0.85 -0.3
1,251,106 + ABZR87_RS21685 0.85 +0.0
1,251,106 + ABZR87_RS21685 0.85 -0.1
1,251,107 - ABZR87_RS21685 0.85 +0.3
1,251,168 + ABZR87_RS21685 0.89 +0.0
1,251,168 + ABZR87_RS21685 0.89 +0.1
1,251,199 + -0.9
1,251,332 + +0.3
1,251,366 + +0.9
1,251,366 + +0.7
1,251,367 - +0.3
1,251,368 + +0.7
1,251,368 + +0.4
1,251,368 + +0.1
1,251,369 - +0.2
1,251,369 - +0.2
1,251,370 + +0.6
1,251,370 + +0.5
1,251,371 - -0.3
1,251,371 - -0.4
1,251,371 - -0.2
1,251,371 - -0.6
1,251,371 - -1.0
1,251,371 - -0.9
1,251,371 - -0.2
1,251,406 + -0.7
1,251,436 + -0.2
1,251,497 - ABZR87_RS21690 0.17 +0.3
1,251,497 - ABZR87_RS21690 0.17 +0.3
1,251,854 - +0.0
1,251,854 - +0.6
1,252,080 - ABZR87_RS21695 0.11 -0.2
1,252,136 + ABZR87_RS21695 0.20 +0.2
1,252,148 + ABZR87_RS21695 0.22 -1.5
1,252,148 + ABZR87_RS21695 0.22 -0.7
1,252,149 - ABZR87_RS21695 0.22 -0.8
1,252,235 + ABZR87_RS21695 0.36 -0.7
1,252,310 + ABZR87_RS21695 0.48 -0.3
1,252,311 - ABZR87_RS21695 0.48 +1.4
1,252,311 - ABZR87_RS21695 0.48 -0.4
1,252,311 - ABZR87_RS21695 0.48 +0.1
1,252,311 - ABZR87_RS21695 0.48 +0.1
1,252,311 - ABZR87_RS21695 0.48 -0.2
1,252,333 - ABZR87_RS21695 0.51 +0.3
1,252,764 + ABZR87_RS21700 0.48 +0.8
1,252,765 - ABZR87_RS21700 0.49 +0.2
1,252,954 - -2.5
1,252,966 - +0.5
1,253,150 + +1.0
1,253,150 + -2.2
1,253,278 + ABZR87_RS21705 0.12 +0.1

Or see this region's nucleotide sequence