Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18855 and HSERO_RS18860 are separated by 243 nucleotides HSERO_RS18860 and HSERO_RS18865 are separated by 38 nucleotides HSERO_RS18865 and HSERO_RS18870 are separated by 61 nucleotides
HSERO_RS18855: HSERO_RS18855 - sensor protein KdpD, at 4,324,190 to 4,326,946
_RS18855
HSERO_RS18860: HSERO_RS18860 - potassium-transporting ATPase subunit C, at 4,327,190 to 4,327,801
_RS18860
HSERO_RS18865: HSERO_RS18865 - potassium-transporting ATPase subunit B, at 4,327,840 to 4,330,032
_RS18865
HSERO_RS18870: HSERO_RS18870 - ATPase, at 4,330,094 to 4,331,875
_RS18870
Position (kb) 4327
4328
4329
4330
4331 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4326.976 kb on - strand at 4327.164 kb on - strand at 4327.164 kb on - strand at 4327.175 kb on + strand at 4327.195 kb on - strand at 4327.245 kb on + strand at 4327.287 kb on - strand, within HSERO_RS18860 at 4327.489 kb on + strand, within HSERO_RS18860 at 4327.646 kb on + strand, within HSERO_RS18860 at 4327.786 kb on + strand at 4327.856 kb on - strand at 4327.856 kb on - strand at 4327.895 kb on + strand at 4327.929 kb on - strand at 4328.021 kb on - strand at 4328.110 kb on + strand, within HSERO_RS18865 at 4328.137 kb on - strand, within HSERO_RS18865 at 4328.160 kb on - strand, within HSERO_RS18865 at 4328.281 kb on + strand, within HSERO_RS18865 at 4328.303 kb on + strand, within HSERO_RS18865 at 4328.311 kb on - strand, within HSERO_RS18865 at 4328.479 kb on + strand, within HSERO_RS18865 at 4328.526 kb on + strand, within HSERO_RS18865 at 4328.549 kb on + strand, within HSERO_RS18865 at 4328.841 kb on + strand, within HSERO_RS18865 at 4328.873 kb on - strand, within HSERO_RS18865 at 4328.886 kb on + strand, within HSERO_RS18865 at 4328.999 kb on + strand, within HSERO_RS18865 at 4329.083 kb on - strand, within HSERO_RS18865 at 4329.291 kb on + strand, within HSERO_RS18865 at 4329.317 kb on + strand, within HSERO_RS18865 at 4329.365 kb on + strand, within HSERO_RS18865 at 4329.522 kb on + strand, within HSERO_RS18865 at 4329.557 kb on + strand, within HSERO_RS18865 at 4329.557 kb on + strand, within HSERO_RS18865 at 4329.557 kb on + strand, within HSERO_RS18865 at 4329.557 kb on + strand, within HSERO_RS18865 at 4329.565 kb on - strand, within HSERO_RS18865 at 4329.565 kb on - strand, within HSERO_RS18865 at 4329.791 kb on + strand, within HSERO_RS18865 at 4329.899 kb on - strand at 4329.913 kb on + strand at 4329.958 kb on + strand at 4329.989 kb on - strand at 4330.470 kb on - strand, within HSERO_RS18870 at 4330.509 kb on - strand, within HSERO_RS18870 at 4330.517 kb on - strand, within HSERO_RS18870 at 4330.701 kb on + strand, within HSERO_RS18870 at 4330.712 kb on + strand, within HSERO_RS18870 at 4330.886 kb on - strand, within HSERO_RS18870 at 4330.935 kb on + strand, within HSERO_RS18870
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 4,326,976 - +0.9 4,327,164 - -0.1 4,327,164 - +1.1 4,327,175 + +0.0 4,327,195 - -0.8 4,327,245 + -0.4 4,327,287 - HSERO_RS18860 0.16 -0.6 4,327,489 + HSERO_RS18860 0.49 +1.6 4,327,646 + HSERO_RS18860 0.75 -3.0 4,327,786 + -1.2 4,327,856 - +0.5 4,327,856 - +0.7 4,327,895 + -0.3 4,327,929 - +0.1 4,328,021 - +1.1 4,328,110 + HSERO_RS18865 0.12 -0.1 4,328,137 - HSERO_RS18865 0.14 +0.2 4,328,160 - HSERO_RS18865 0.15 -0.1 4,328,281 + HSERO_RS18865 0.20 +2.4 4,328,303 + HSERO_RS18865 0.21 +0.5 4,328,311 - HSERO_RS18865 0.21 -0.2 4,328,479 + HSERO_RS18865 0.29 +0.1 4,328,526 + HSERO_RS18865 0.31 +1.3 4,328,549 + HSERO_RS18865 0.32 +0.0 4,328,841 + HSERO_RS18865 0.46 -0.6 4,328,873 - HSERO_RS18865 0.47 +0.2 4,328,886 + HSERO_RS18865 0.48 -1.7 4,328,999 + HSERO_RS18865 0.53 -0.3 4,329,083 - HSERO_RS18865 0.57 -0.1 4,329,291 + HSERO_RS18865 0.66 +1.2 4,329,317 + HSERO_RS18865 0.67 -0.0 4,329,365 + HSERO_RS18865 0.70 +2.1 4,329,522 + HSERO_RS18865 0.77 -0.5 4,329,557 + HSERO_RS18865 0.78 +0.3 4,329,557 + HSERO_RS18865 0.78 -0.1 4,329,557 + HSERO_RS18865 0.78 -0.4 4,329,557 + HSERO_RS18865 0.78 -0.5 4,329,565 - HSERO_RS18865 0.79 -0.4 4,329,565 - HSERO_RS18865 0.79 +0.4 4,329,791 + HSERO_RS18865 0.89 +0.1 4,329,899 - +0.1 4,329,913 + +1.8 4,329,958 + -0.4 4,329,989 - +1.2 4,330,470 - HSERO_RS18870 0.21 -1.1 4,330,509 - HSERO_RS18870 0.23 +1.1 4,330,517 - HSERO_RS18870 0.24 +0.4 4,330,701 + HSERO_RS18870 0.34 -0.5 4,330,712 + HSERO_RS18870 0.35 -1.5 4,330,886 - HSERO_RS18870 0.44 -2.6 4,330,935 + HSERO_RS18870 0.47 -3.0
Or see this region's nucleotide sequence