Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS06865 and HSERO_RS06870 are separated by 134 nucleotides HSERO_RS06870 and HSERO_RS06875 are separated by 113 nucleotides
HSERO_RS06865: HSERO_RS06865 - two component response regulator protein, at 1,563,324 to 1,563,998
_RS06865
HSERO_RS06870: HSERO_RS06870 - L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) (from data) , at 1,564,133 to 1,565,053
_RS06870
HSERO_RS06875: HSERO_RS06875 - LysR family transcriptional regulator, at 1,565,167 to 1,566,111
_RS06875
Position (kb)
1564
1565
1566 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1563.241 kb on - strand at 1563.243 kb on + strand at 1563.251 kb on - strand at 1563.259 kb on - strand at 1563.343 kb on - strand at 1563.373 kb on - strand at 1563.401 kb on + strand, within HSERO_RS06865 at 1563.403 kb on + strand, within HSERO_RS06865 at 1563.403 kb on + strand, within HSERO_RS06865 at 1563.428 kb on + strand, within HSERO_RS06865 at 1563.462 kb on + strand, within HSERO_RS06865 at 1563.531 kb on - strand, within HSERO_RS06865 at 1563.553 kb on - strand, within HSERO_RS06865 at 1563.578 kb on + strand, within HSERO_RS06865 at 1563.605 kb on + strand, within HSERO_RS06865 at 1563.712 kb on + strand, within HSERO_RS06865 at 1563.790 kb on - strand, within HSERO_RS06865 at 1563.851 kb on + strand at 1563.851 kb on + strand, within HSERO_RS06865 at 1563.962 kb on + strand at 1563.965 kb on - strand at 1563.992 kb on - strand at 1564.198 kb on + strand at 1564.216 kb on + strand at 1564.278 kb on - strand, within HSERO_RS06870 at 1564.318 kb on - strand, within HSERO_RS06870 at 1564.329 kb on + strand, within HSERO_RS06870 at 1564.530 kb on - strand at 1564.530 kb on - strand, within HSERO_RS06870 at 1564.790 kb on + strand, within HSERO_RS06870 at 1564.793 kb on - strand, within HSERO_RS06870 at 1564.839 kb on + strand at 1564.847 kb on + strand, within HSERO_RS06870 at 1564.859 kb on + strand, within HSERO_RS06870 at 1564.967 kb on + strand at 1565.089 kb on + strand at 1565.256 kb on + strand at 1565.297 kb on - strand, within HSERO_RS06875 at 1565.330 kb on - strand, within HSERO_RS06875 at 1565.469 kb on - strand, within HSERO_RS06875 at 1565.469 kb on - strand, within HSERO_RS06875 at 1565.572 kb on - strand, within HSERO_RS06875 at 1565.572 kb on - strand, within HSERO_RS06875 at 1565.618 kb on + strand, within HSERO_RS06875 at 1565.623 kb on + strand, within HSERO_RS06875 at 1565.707 kb on - strand, within HSERO_RS06875 at 1565.894 kb on + strand, within HSERO_RS06875
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 1,563,241 - -1.9 1,563,243 + -0.2 1,563,251 - -2.5 1,563,259 - +0.4 1,563,343 - +0.8 1,563,373 - -0.5 1,563,401 + HSERO_RS06865 0.11 -0.5 1,563,403 + HSERO_RS06865 0.12 -0.3 1,563,403 + HSERO_RS06865 0.12 -1.8 1,563,428 + HSERO_RS06865 0.15 -0.1 1,563,462 + HSERO_RS06865 0.20 -0.6 1,563,531 - HSERO_RS06865 0.31 -0.1 1,563,553 - HSERO_RS06865 0.34 +1.2 1,563,578 + HSERO_RS06865 0.38 +1.6 1,563,605 + HSERO_RS06865 0.42 +0.0 1,563,712 + HSERO_RS06865 0.57 -1.5 1,563,790 - HSERO_RS06865 0.69 -0.3 1,563,851 + -1.4 1,563,851 + HSERO_RS06865 0.78 -0.1 1,563,962 + +0.3 1,563,965 - +0.6 1,563,992 - -0.2 1,564,198 + -0.1 1,564,216 + -0.5 1,564,278 - HSERO_RS06870 0.16 +0.5 1,564,318 - HSERO_RS06870 0.20 -0.3 1,564,329 + HSERO_RS06870 0.21 +1.7 1,564,530 - +2.6 1,564,530 - HSERO_RS06870 0.43 +1.3 1,564,790 + HSERO_RS06870 0.71 +0.5 1,564,793 - HSERO_RS06870 0.72 -2.2 1,564,839 + +0.5 1,564,847 + HSERO_RS06870 0.78 +0.5 1,564,859 + HSERO_RS06870 0.79 +0.2 1,564,967 + -0.1 1,565,089 + -0.3 1,565,256 + -0.6 1,565,297 - HSERO_RS06875 0.14 -0.1 1,565,330 - HSERO_RS06875 0.17 +0.4 1,565,469 - HSERO_RS06875 0.32 +0.4 1,565,469 - HSERO_RS06875 0.32 -0.5 1,565,572 - HSERO_RS06875 0.43 +0.2 1,565,572 - HSERO_RS06875 0.43 -0.2 1,565,618 + HSERO_RS06875 0.48 +0.9 1,565,623 + HSERO_RS06875 0.48 -1.5 1,565,707 - HSERO_RS06875 0.57 -1.0 1,565,894 + HSERO_RS06875 0.77 +0.3
Or see this region's nucleotide sequence