Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03595 and HSERO_RS03600 are separated by 377 nucleotides HSERO_RS03600 and HSERO_RS03605 are separated by 317 nucleotides HSERO_RS03605 and HSERO_RS03610 overlap by 14 nucleotides
HSERO_RS03595: HSERO_RS03595 - cation transporter, at 784,508 to 785,386
_RS03595
HSERO_RS03600: HSERO_RS03600 - chemotaxis protein, at 785,764 to 787,308
_RS03600
HSERO_RS03605: HSERO_RS03605 - 16S rRNA maturation RNase YbeY, at 787,626 to 788,081
_RS03605
HSERO_RS03610: HSERO_RS03610 - phosphate starvation protein PhoH, at 788,068 to 789,189
_RS03610
Position (kb) 785
786
787
788 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 784.777 kb on - strand, within HSERO_RS03595 at 785.001 kb on - strand, within HSERO_RS03595 at 785.148 kb on - strand, within HSERO_RS03595 at 785.333 kb on - strand at 785.419 kb on - strand at 785.560 kb on + strand at 785.588 kb on - strand at 785.662 kb on + strand at 785.674 kb on + strand at 785.691 kb on - strand at 785.783 kb on + strand at 785.793 kb on + strand at 785.901 kb on + strand at 785.901 kb on + strand at 785.909 kb on - strand at 785.909 kb on - strand at 785.990 kb on - strand, within HSERO_RS03600 at 786.091 kb on - strand, within HSERO_RS03600 at 786.108 kb on + strand, within HSERO_RS03600 at 786.258 kb on + strand, within HSERO_RS03600 at 786.293 kb on - strand, within HSERO_RS03600 at 786.295 kb on + strand, within HSERO_RS03600 at 786.382 kb on - strand, within HSERO_RS03600 at 786.444 kb on + strand, within HSERO_RS03600 at 786.483 kb on - strand, within HSERO_RS03600 at 786.550 kb on - strand, within HSERO_RS03600 at 786.670 kb on + strand, within HSERO_RS03600 at 786.699 kb on + strand, within HSERO_RS03600 at 786.744 kb on + strand, within HSERO_RS03600 at 786.744 kb on + strand, within HSERO_RS03600 at 786.752 kb on - strand, within HSERO_RS03600 at 786.752 kb on - strand, within HSERO_RS03600 at 786.755 kb on + strand, within HSERO_RS03600 at 786.755 kb on + strand, within HSERO_RS03600 at 786.936 kb on - strand, within HSERO_RS03600 at 787.095 kb on + strand, within HSERO_RS03600 at 787.277 kb on - strand at 787.292 kb on + strand at 787.369 kb on - strand at 787.422 kb on + strand at 787.644 kb on - strand at 788.287 kb on + strand, within HSERO_RS03610 at 788.295 kb on - strand, within HSERO_RS03610 at 788.300 kb on - strand, within HSERO_RS03610 at 788.307 kb on - strand, within HSERO_RS03610
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 784,777 - HSERO_RS03595 0.31 +0.3 785,001 - HSERO_RS03595 0.56 -1.6 785,148 - HSERO_RS03595 0.73 -1.1 785,333 - +1.1 785,419 - -0.9 785,560 + +0.1 785,588 - +0.0 785,662 + +0.0 785,674 + -0.0 785,691 - -1.8 785,783 + +1.0 785,793 + +0.1 785,901 + +0.4 785,901 + -2.4 785,909 - -1.2 785,909 - -0.7 785,990 - HSERO_RS03600 0.15 +0.4 786,091 - HSERO_RS03600 0.21 -1.4 786,108 + HSERO_RS03600 0.22 +0.1 786,258 + HSERO_RS03600 0.32 +1.1 786,293 - HSERO_RS03600 0.34 +0.2 786,295 + HSERO_RS03600 0.34 +0.4 786,382 - HSERO_RS03600 0.40 +0.4 786,444 + HSERO_RS03600 0.44 +1.5 786,483 - HSERO_RS03600 0.47 -0.2 786,550 - HSERO_RS03600 0.51 +1.7 786,670 + HSERO_RS03600 0.59 +5.2 786,699 + HSERO_RS03600 0.61 -0.7 786,744 + HSERO_RS03600 0.63 -0.1 786,744 + HSERO_RS03600 0.63 +0.1 786,752 - HSERO_RS03600 0.64 +1.6 786,752 - HSERO_RS03600 0.64 +0.1 786,755 + HSERO_RS03600 0.64 +0.4 786,755 + HSERO_RS03600 0.64 +1.1 786,936 - HSERO_RS03600 0.76 -1.2 787,095 + HSERO_RS03600 0.86 -0.9 787,277 - -1.6 787,292 + -0.5 787,369 - -0.0 787,422 + -0.3 787,644 - +0.2 788,287 + HSERO_RS03610 0.20 +0.4 788,295 - HSERO_RS03610 0.20 +0.2 788,300 - HSERO_RS03610 0.21 +0.3 788,307 - HSERO_RS03610 0.21 -0.5
Or see this region's nucleotide sequence