Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS23440 and ABZR87_RS23445 overlap by 14 nucleotides ABZR87_RS23445 and ABZR87_RS23450 are separated by 9 nucleotides ABZR87_RS23450 and ABZR87_RS23455 overlap by 4 nucleotides
ABZR87_RS23440: ABZR87_RS23440 - triphosphoribosyl-dephospho-CoA synthase, at 1,623,642 to 1,624,571
_RS23440
ABZR87_RS23445: ABZR87_RS23445 - malonate decarboxylase subunit delta, at 1,624,558 to 1,624,863
_RS23445
ABZR87_RS23450: ABZR87_RS23450 - biotin-independent malonate decarboxylase subunit beta, at 1,624,873 to 1,625,718
_RS23450
ABZR87_RS23455: ABZR87_RS23455 - biotin-independent malonate decarboxylase subunit gamma, at 1,625,715 to 1,626,545
_RS23455
Position (kb) 1624
1625
1626 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1624.043 kb on - strand, within ABZR87_RS23440 at 1624.147 kb on - strand, within ABZR87_RS23440 at 1624.612 kb on + strand, within ABZR87_RS23445 at 1624.612 kb on + strand, within ABZR87_RS23445 at 1624.613 kb on - strand, within ABZR87_RS23445 at 1624.861 kb on + strand at 1624.862 kb on - strand at 1625.022 kb on + strand, within ABZR87_RS23450 at 1625.380 kb on + strand, within ABZR87_RS23450 at 1625.380 kb on + strand, within ABZR87_RS23450 at 1625.380 kb on + strand, within ABZR87_RS23450 at 1625.458 kb on + strand, within ABZR87_RS23450 at 1625.458 kb on + strand, within ABZR87_RS23450 at 1625.459 kb on - strand, within ABZR87_RS23450 at 1625.633 kb on - strand, within ABZR87_RS23450 at 1625.633 kb on - strand, within ABZR87_RS23450 at 1625.633 kb on - strand, within ABZR87_RS23450 at 1625.687 kb on + strand at 1625.687 kb on + strand at 1625.687 kb on + strand at 1625.687 kb on + strand at 1625.687 kb on + strand at 1625.687 kb on + strand at 1625.687 kb on + strand at 1625.698 kb on + strand at 1625.699 kb on - strand at 1625.699 kb on - strand at 1625.699 kb on - strand at 1625.844 kb on + strand, within ABZR87_RS23455 at 1625.845 kb on - strand, within ABZR87_RS23455 at 1626.019 kb on - strand, within ABZR87_RS23455 at 1626.019 kb on - strand, within ABZR87_RS23455 at 1626.019 kb on - strand, within ABZR87_RS23455 at 1626.040 kb on - strand, within ABZR87_RS23455 at 1626.079 kb on - strand, within ABZR87_RS23455 at 1626.241 kb on + strand, within ABZR87_RS23455 at 1626.300 kb on + strand, within ABZR87_RS23455 at 1626.300 kb on + strand, within ABZR87_RS23455 at 1626.300 kb on + strand, within ABZR87_RS23455 at 1626.301 kb on - strand, within ABZR87_RS23455 at 1626.301 kb on - strand, within ABZR87_RS23455 at 1626.543 kb on + strand at 1626.543 kb on + strand at 1626.543 kb on + strand at 1626.550 kb on + strand at 1626.598 kb on + strand at 1626.608 kb on - strand at 1626.608 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 1,624,043 - ABZR87_RS23440 0.43 -0.8 1,624,147 - ABZR87_RS23440 0.54 -0.4 1,624,612 + ABZR87_RS23445 0.18 +0.1 1,624,612 + ABZR87_RS23445 0.18 -0.3 1,624,613 - ABZR87_RS23445 0.18 +0.2 1,624,861 + -0.5 1,624,862 - -0.1 1,625,022 + ABZR87_RS23450 0.18 -0.4 1,625,380 + ABZR87_RS23450 0.60 -0.1 1,625,380 + ABZR87_RS23450 0.60 +1.1 1,625,380 + ABZR87_RS23450 0.60 +1.9 1,625,458 + ABZR87_RS23450 0.69 +0.1 1,625,458 + ABZR87_RS23450 0.69 +0.5 1,625,459 - ABZR87_RS23450 0.69 -0.4 1,625,633 - ABZR87_RS23450 0.90 -0.1 1,625,633 - ABZR87_RS23450 0.90 -0.2 1,625,633 - ABZR87_RS23450 0.90 -0.8 1,625,687 + -0.8 1,625,687 + -0.2 1,625,687 + -0.6 1,625,687 + -0.0 1,625,687 + +0.6 1,625,687 + +0.5 1,625,687 + +0.4 1,625,698 + +0.6 1,625,699 - -0.5 1,625,699 - -1.0 1,625,699 - -0.7 1,625,844 + ABZR87_RS23455 0.16 +0.2 1,625,845 - ABZR87_RS23455 0.16 +0.6 1,626,019 - ABZR87_RS23455 0.37 +1.2 1,626,019 - ABZR87_RS23455 0.37 +0.3 1,626,019 - ABZR87_RS23455 0.37 +1.6 1,626,040 - ABZR87_RS23455 0.39 +0.0 1,626,079 - ABZR87_RS23455 0.44 +0.1 1,626,241 + ABZR87_RS23455 0.63 -0.0 1,626,300 + ABZR87_RS23455 0.70 -1.0 1,626,300 + ABZR87_RS23455 0.70 +0.6 1,626,300 + ABZR87_RS23455 0.70 +0.7 1,626,301 - ABZR87_RS23455 0.71 -0.8 1,626,301 - ABZR87_RS23455 0.71 -0.3 1,626,543 + -2.0 1,626,543 + +0.8 1,626,543 + +1.0 1,626,550 + +1.1 1,626,598 + +2.3 1,626,608 - -0.8 1,626,608 - +0.3
Or see this region's nucleotide sequence