Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20395

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20390 and ABZR87_RS20395 are separated by 197 nucleotidesABZR87_RS20395 and ABZR87_RS20400 are separated by 60 nucleotidesABZR87_RS20400 and ABZR87_RS20405 overlap by 4 nucleotides ABZR87_RS20390: ABZR87_RS20390 - LLM class flavin-dependent oxidoreductase, at 962,263 to 963,354 _RS20390 ABZR87_RS20395: ABZR87_RS20395 - acyl-CoA dehydrogenase family protein, at 963,552 to 964,760 _RS20395 ABZR87_RS20400: ABZR87_RS20400 - cysteine dioxygenase, at 964,821 to 965,489 _RS20400 ABZR87_RS20405: ABZR87_RS20405 - rhodanese-related sulfurtransferase, at 965,486 to 967,126 _RS20405 Position (kb) 963 964 965Strain fitness (log2 ratio) -2 -1 0 1at 962.771 kb on + strand, within ABZR87_RS20390at 962.771 kb on + strand, within ABZR87_RS20390at 962.807 kb on - strand, within ABZR87_RS20390at 962.828 kb on + strand, within ABZR87_RS20390at 962.829 kb on - strand, within ABZR87_RS20390at 962.888 kb on + strand, within ABZR87_RS20390at 962.889 kb on - strand, within ABZR87_RS20390at 962.889 kb on - strand, within ABZR87_RS20390at 962.889 kb on - strand, within ABZR87_RS20390at 962.889 kb on - strand, within ABZR87_RS20390at 962.951 kb on + strand, within ABZR87_RS20390at 962.952 kb on - strand, within ABZR87_RS20390at 963.165 kb on - strand, within ABZR87_RS20390at 963.165 kb on - strand, within ABZR87_RS20390at 963.259 kb on + strandat 963.259 kb on + strandat 963.260 kb on - strandat 963.260 kb on - strandat 963.263 kb on + strandat 963.378 kb on + strandat 963.470 kb on + strandat 963.471 kb on - strandat 963.471 kb on - strandat 963.472 kb on + strandat 963.473 kb on - strandat 963.473 kb on - strandat 963.473 kb on - strandat 963.479 kb on + strandat 963.479 kb on + strandat 963.480 kb on - strandat 963.831 kb on + strand, within ABZR87_RS20395at 963.831 kb on + strand, within ABZR87_RS20395at 963.832 kb on - strand, within ABZR87_RS20395at 963.864 kb on - strand, within ABZR87_RS20395at 964.039 kb on - strand, within ABZR87_RS20395at 964.356 kb on + strand, within ABZR87_RS20395at 964.356 kb on + strand, within ABZR87_RS20395at 964.489 kb on + strand, within ABZR87_RS20395at 964.579 kb on - strand, within ABZR87_RS20395at 964.856 kb on + strandat 964.857 kb on - strandat 965.035 kb on - strand, within ABZR87_RS20400at 965.035 kb on - strand, within ABZR87_RS20400at 965.193 kb on + strand, within ABZR87_RS20400at 965.392 kb on - strand, within ABZR87_RS20400at 965.393 kb on + strand, within ABZR87_RS20400at 965.393 kb on + strand, within ABZR87_RS20400at 965.393 kb on + strand, within ABZR87_RS20400at 965.561 kb on + strandat 965.633 kb on + strandat 965.634 kb on - strandat 965.634 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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962,771 + ABZR87_RS20390 0.47 +0.6
962,771 + ABZR87_RS20390 0.47 -0.1
962,807 - ABZR87_RS20390 0.50 -0.5
962,828 + ABZR87_RS20390 0.52 +0.7
962,829 - ABZR87_RS20390 0.52 +0.2
962,888 + ABZR87_RS20390 0.57 -0.3
962,889 - ABZR87_RS20390 0.57 +0.9
962,889 - ABZR87_RS20390 0.57 +0.4
962,889 - ABZR87_RS20390 0.57 +1.2
962,889 - ABZR87_RS20390 0.57 +0.4
962,951 + ABZR87_RS20390 0.63 -0.1
962,952 - ABZR87_RS20390 0.63 -0.9
963,165 - ABZR87_RS20390 0.83 +0.5
963,165 - ABZR87_RS20390 0.83 -1.5
963,259 + +0.7
963,259 + +1.1
963,260 - +0.1
963,260 - -0.3
963,263 + +0.6
963,378 + +0.1
963,470 + -0.7
963,471 - +0.3
963,471 - +0.1
963,472 + -0.4
963,473 - +0.1
963,473 - -0.2
963,473 - -0.0
963,479 + +0.8
963,479 + -0.0
963,480 - -0.2
963,831 + ABZR87_RS20395 0.23 -0.7
963,831 + ABZR87_RS20395 0.23 +0.0
963,832 - ABZR87_RS20395 0.23 -0.6
963,864 - ABZR87_RS20395 0.26 +0.3
964,039 - ABZR87_RS20395 0.40 +1.1
964,356 + ABZR87_RS20395 0.67 -0.1
964,356 + ABZR87_RS20395 0.67 -0.1
964,489 + ABZR87_RS20395 0.78 -0.1
964,579 - ABZR87_RS20395 0.85 -0.0
964,856 + +0.5
964,857 - +0.2
965,035 - ABZR87_RS20400 0.32 +0.3
965,035 - ABZR87_RS20400 0.32 -1.9
965,193 + ABZR87_RS20400 0.56 -0.0
965,392 - ABZR87_RS20400 0.85 +0.8
965,393 + ABZR87_RS20400 0.86 -0.0
965,393 + ABZR87_RS20400 0.86 +0.3
965,393 + ABZR87_RS20400 0.86 -0.0
965,561 + -0.8
965,633 + -0.8
965,634 - +0.5
965,634 - -1.6

Or see this region's nucleotide sequence