Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18810

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18805 and ABZR87_RS18810 are separated by 13 nucleotidesABZR87_RS18810 and ABZR87_RS18815 are separated by 187 nucleotides ABZR87_RS18805: ABZR87_RS18805 - hypothetical protein, at 571,484 to 572,410 _RS18805 ABZR87_RS18810: ABZR87_RS18810 - PGDYG domain-containing protein, at 572,424 to 572,855 _RS18810 ABZR87_RS18815: ABZR87_RS18815 - membrane dipeptidase, at 573,043 to 574,470 _RS18815 Position (kb) 572 573Strain fitness (log2 ratio) -2 -1 0 1 2at 571.454 kb on + strandat 571.454 kb on + strandat 571.455 kb on - strandat 571.455 kb on - strandat 571.489 kb on + strandat 571.489 kb on + strandat 571.489 kb on + strandat 571.489 kb on + strandat 571.489 kb on + strandat 571.490 kb on - strandat 571.490 kb on - strandat 571.490 kb on - strandat 571.490 kb on - strandat 571.490 kb on - strandat 571.490 kb on - strandat 571.490 kb on - strandat 571.490 kb on - strandat 571.490 kb on - strandat 571.490 kb on - strandat 571.490 kb on - strandat 571.507 kb on + strandat 571.508 kb on - strandat 571.508 kb on - strandat 571.508 kb on - strandat 571.610 kb on + strand, within ABZR87_RS18805at 571.610 kb on + strand, within ABZR87_RS18805at 571.611 kb on - strand, within ABZR87_RS18805at 571.611 kb on - strand, within ABZR87_RS18805at 571.611 kb on - strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.706 kb on + strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.707 kb on - strand, within ABZR87_RS18805at 571.708 kb on + strand, within ABZR87_RS18805at 571.708 kb on + strand, within ABZR87_RS18805at 571.708 kb on + strand, within ABZR87_RS18805at 571.808 kb on - strand, within ABZR87_RS18805at 571.808 kb on - strand, within ABZR87_RS18805at 571.808 kb on - strand, within ABZR87_RS18805at 571.814 kb on + strand, within ABZR87_RS18805at 571.814 kb on + strand, within ABZR87_RS18805at 571.815 kb on - strand, within ABZR87_RS18805at 571.815 kb on - strand, within ABZR87_RS18805at 571.917 kb on - strand, within ABZR87_RS18805at 571.943 kb on + strand, within ABZR87_RS18805at 571.994 kb on + strand, within ABZR87_RS18805at 571.995 kb on - strand, within ABZR87_RS18805at 572.060 kb on + strand, within ABZR87_RS18805at 572.060 kb on + strand, within ABZR87_RS18805at 572.060 kb on + strand, within ABZR87_RS18805at 572.060 kb on + strand, within ABZR87_RS18805at 572.060 kb on + strand, within ABZR87_RS18805at 572.060 kb on + strand, within ABZR87_RS18805at 572.060 kb on + strand, within ABZR87_RS18805at 572.060 kb on + strand, within ABZR87_RS18805at 572.061 kb on - strand, within ABZR87_RS18805at 572.061 kb on - strand, within ABZR87_RS18805at 572.066 kb on + strand, within ABZR87_RS18805at 572.066 kb on + strand, within ABZR87_RS18805at 572.066 kb on + strand, within ABZR87_RS18805at 572.066 kb on + strand, within ABZR87_RS18805at 572.067 kb on - strand, within ABZR87_RS18805at 572.067 kb on - strand, within ABZR87_RS18805at 572.067 kb on - strand, within ABZR87_RS18805at 572.105 kb on + strand, within ABZR87_RS18805at 572.105 kb on + strand, within ABZR87_RS18805at 572.105 kb on + strand, within ABZR87_RS18805at 572.105 kb on + strand, within ABZR87_RS18805at 572.105 kb on + strand, within ABZR87_RS18805at 572.105 kb on + strand, within ABZR87_RS18805at 572.105 kb on + strand, within ABZR87_RS18805at 572.105 kb on + strand, within ABZR87_RS18805at 572.105 kb on + strand, within ABZR87_RS18805at 572.106 kb on - strand, within ABZR87_RS18805at 572.106 kb on - strand, within ABZR87_RS18805at 572.106 kb on - strand, within ABZR87_RS18805at 572.106 kb on - strand, within ABZR87_RS18805at 572.106 kb on - strand, within ABZR87_RS18805at 572.106 kb on - strand, within ABZR87_RS18805at 572.107 kb on - strand, within ABZR87_RS18805at 572.141 kb on - strand, within ABZR87_RS18805at 572.141 kb on - strand, within ABZR87_RS18805at 572.180 kb on + strand, within ABZR87_RS18805at 572.180 kb on + strand, within ABZR87_RS18805at 572.180 kb on + strand, within ABZR87_RS18805at 572.226 kb on - strand, within ABZR87_RS18805at 572.226 kb on - strand, within ABZR87_RS18805at 572.228 kb on + strand, within ABZR87_RS18805at 572.228 kb on + strand, within ABZR87_RS18805at 572.228 kb on + strand, within ABZR87_RS18805at 572.228 kb on + strand, within ABZR87_RS18805at 572.229 kb on - strand, within ABZR87_RS18805at 572.246 kb on + strand, within ABZR87_RS18805at 572.360 kb on + strandat 572.360 kb on + strandat 572.361 kb on - strandat 572.361 kb on - strandat 572.361 kb on - strandat 572.420 kb on + strandat 572.421 kb on - strandat 572.421 kb on - strandat 572.438 kb on - strandat 572.488 kb on + strand, within ABZR87_RS18810at 572.489 kb on - strand, within ABZR87_RS18810at 572.489 kb on - strand, within ABZR87_RS18810at 572.489 kb on - strand, within ABZR87_RS18810at 572.523 kb on + strand, within ABZR87_RS18810at 572.523 kb on + strand, within ABZR87_RS18810at 572.523 kb on + strand, within ABZR87_RS18810at 572.524 kb on - strand, within ABZR87_RS18810at 572.524 kb on - strand, within ABZR87_RS18810at 572.647 kb on + strand, within ABZR87_RS18810at 572.647 kb on + strand, within ABZR87_RS18810at 572.648 kb on - strand, within ABZR87_RS18810at 572.648 kb on - strand, within ABZR87_RS18810at 572.648 kb on - strand, within ABZR87_RS18810at 572.725 kb on + strand, within ABZR87_RS18810at 572.726 kb on - strand, within ABZR87_RS18810at 572.726 kb on - strand, within ABZR87_RS18810at 572.795 kb on - strand, within ABZR87_RS18810at 572.901 kb on + strandat 572.901 kb on + strandat 572.908 kb on - strandat 572.964 kb on + strandat 572.964 kb on + strandat 572.964 kb on + strandat 572.974 kb on + strandat 572.974 kb on + strandat 572.974 kb on + strandat 572.974 kb on + strandat 572.988 kb on - strandat 573.015 kb on + strandat 573.016 kb on - strandat 573.158 kb on - strandat 573.158 kb on - strandat 573.451 kb on + strand, within ABZR87_RS18815at 573.451 kb on + strand, within ABZR87_RS18815at 573.451 kb on + strand, within ABZR87_RS18815at 573.452 kb on - strand, within ABZR87_RS18815at 573.452 kb on - strand, within ABZR87_RS18815at 573.452 kb on - strand, within ABZR87_RS18815at 573.452 kb on - strand, within ABZR87_RS18815at 573.452 kb on - strand, within ABZR87_RS18815at 573.516 kb on + strand, within ABZR87_RS18815at 573.517 kb on - strand, within ABZR87_RS18815at 573.722 kb on - strand, within ABZR87_RS18815

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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571,454 + -1.1
571,454 + +0.3
571,455 - -1.4
571,455 - -0.0
571,489 + +0.3
571,489 + -1.3
571,489 + +0.7
571,489 + +0.3
571,489 + -0.0
571,490 - +0.3
571,490 - +0.2
571,490 - -0.2
571,490 - -0.3
571,490 - -0.6
571,490 - +0.7
571,490 - +0.7
571,490 - +0.6
571,490 - -0.6
571,490 - +1.1
571,490 - +0.2
571,507 + +0.2
571,508 - +0.4
571,508 - +0.4
571,508 - +0.5
571,610 + ABZR87_RS18805 0.14 +0.2
571,610 + ABZR87_RS18805 0.14 -1.2
571,611 - ABZR87_RS18805 0.14 -1.0
571,611 - ABZR87_RS18805 0.14 +0.5
571,611 - ABZR87_RS18805 0.14 +0.6
571,706 + ABZR87_RS18805 0.24 +0.3
571,706 + ABZR87_RS18805 0.24 +0.0
571,706 + ABZR87_RS18805 0.24 +0.9
571,706 + ABZR87_RS18805 0.24 -0.4
571,706 + ABZR87_RS18805 0.24 -0.3
571,706 + ABZR87_RS18805 0.24 +0.3
571,706 + ABZR87_RS18805 0.24 -0.7
571,706 + ABZR87_RS18805 0.24 -0.8
571,706 + ABZR87_RS18805 0.24 -1.3
571,706 + ABZR87_RS18805 0.24 -0.1
571,706 + ABZR87_RS18805 0.24 +0.2
571,706 + ABZR87_RS18805 0.24 -0.7
571,706 + ABZR87_RS18805 0.24 -0.2
571,707 - ABZR87_RS18805 0.24 +0.8
571,707 - ABZR87_RS18805 0.24 +0.3
571,707 - ABZR87_RS18805 0.24 -0.2
571,707 - ABZR87_RS18805 0.24 -0.9
571,707 - ABZR87_RS18805 0.24 +0.3
571,707 - ABZR87_RS18805 0.24 +0.7
571,707 - ABZR87_RS18805 0.24 +0.1
571,707 - ABZR87_RS18805 0.24 +0.1
571,707 - ABZR87_RS18805 0.24 -0.1
571,707 - ABZR87_RS18805 0.24 +0.2
571,707 - ABZR87_RS18805 0.24 +1.5
571,707 - ABZR87_RS18805 0.24 +0.0
571,707 - ABZR87_RS18805 0.24 -0.4
571,707 - ABZR87_RS18805 0.24 +0.3
571,707 - ABZR87_RS18805 0.24 +0.3
571,707 - ABZR87_RS18805 0.24 -0.3
571,707 - ABZR87_RS18805 0.24 -0.0
571,708 + ABZR87_RS18805 0.24 +0.4
571,708 + ABZR87_RS18805 0.24 +0.2
571,708 + ABZR87_RS18805 0.24 +0.3
571,808 - ABZR87_RS18805 0.35 +0.2
571,808 - ABZR87_RS18805 0.35 -0.2
571,808 - ABZR87_RS18805 0.35 +0.4
571,814 + ABZR87_RS18805 0.36 +0.7
571,814 + ABZR87_RS18805 0.36 -2.3
571,815 - ABZR87_RS18805 0.36 -1.1
571,815 - ABZR87_RS18805 0.36 -0.0
571,917 - ABZR87_RS18805 0.47 +0.3
571,943 + ABZR87_RS18805 0.50 +0.4
571,994 + ABZR87_RS18805 0.55 +1.3
571,995 - ABZR87_RS18805 0.55 +0.7
572,060 + ABZR87_RS18805 0.62 +0.2
572,060 + ABZR87_RS18805 0.62 -0.8
572,060 + ABZR87_RS18805 0.62 -0.2
572,060 + ABZR87_RS18805 0.62 +0.2
572,060 + ABZR87_RS18805 0.62 -1.2
572,060 + ABZR87_RS18805 0.62 +0.2
572,060 + ABZR87_RS18805 0.62 +0.1
572,060 + ABZR87_RS18805 0.62 +0.1
572,061 - ABZR87_RS18805 0.62 +0.9
572,061 - ABZR87_RS18805 0.62 +0.4
572,066 + ABZR87_RS18805 0.63 -0.4
572,066 + ABZR87_RS18805 0.63 +0.1
572,066 + ABZR87_RS18805 0.63 +0.6
572,066 + ABZR87_RS18805 0.63 -0.5
572,067 - ABZR87_RS18805 0.63 +0.9
572,067 - ABZR87_RS18805 0.63 +0.2
572,067 - ABZR87_RS18805 0.63 -1.3
572,105 + ABZR87_RS18805 0.67 -0.5
572,105 + ABZR87_RS18805 0.67 +0.2
572,105 + ABZR87_RS18805 0.67 +1.3
572,105 + ABZR87_RS18805 0.67 +0.1
572,105 + ABZR87_RS18805 0.67 +0.7
572,105 + ABZR87_RS18805 0.67 +0.0
572,105 + ABZR87_RS18805 0.67 -0.3
572,105 + ABZR87_RS18805 0.67 -0.3
572,105 + ABZR87_RS18805 0.67 -0.4
572,106 - ABZR87_RS18805 0.67 +0.6
572,106 - ABZR87_RS18805 0.67 +1.0
572,106 - ABZR87_RS18805 0.67 +0.7
572,106 - ABZR87_RS18805 0.67 -0.9
572,106 - ABZR87_RS18805 0.67 +0.3
572,106 - ABZR87_RS18805 0.67 -0.2
572,107 - ABZR87_RS18805 0.67 +0.9
572,141 - ABZR87_RS18805 0.71 -0.3
572,141 - ABZR87_RS18805 0.71 -0.3
572,180 + ABZR87_RS18805 0.75 -0.1
572,180 + ABZR87_RS18805 0.75 -0.1
572,180 + ABZR87_RS18805 0.75 -0.2
572,226 - ABZR87_RS18805 0.80 -0.3
572,226 - ABZR87_RS18805 0.80 +0.6
572,228 + ABZR87_RS18805 0.80 -1.0
572,228 + ABZR87_RS18805 0.80 +0.3
572,228 + ABZR87_RS18805 0.80 +0.6
572,228 + ABZR87_RS18805 0.80 +1.1
572,229 - ABZR87_RS18805 0.80 -0.4
572,246 + ABZR87_RS18805 0.82 -0.6
572,360 + +0.6
572,360 + +0.3
572,361 - -0.2
572,361 - +0.5
572,361 - +0.9
572,420 + +0.3
572,421 - +0.2
572,421 - +1.5
572,438 - -0.0
572,488 + ABZR87_RS18810 0.15 +0.2
572,489 - ABZR87_RS18810 0.15 +0.8
572,489 - ABZR87_RS18810 0.15 -0.4
572,489 - ABZR87_RS18810 0.15 +1.1
572,523 + ABZR87_RS18810 0.23 -0.2
572,523 + ABZR87_RS18810 0.23 +1.3
572,523 + ABZR87_RS18810 0.23 -0.3
572,524 - ABZR87_RS18810 0.23 -1.3
572,524 - ABZR87_RS18810 0.23 +0.2
572,647 + ABZR87_RS18810 0.52 -0.3
572,647 + ABZR87_RS18810 0.52 +0.2
572,648 - ABZR87_RS18810 0.52 +0.7
572,648 - ABZR87_RS18810 0.52 -1.0
572,648 - ABZR87_RS18810 0.52 -0.1
572,725 + ABZR87_RS18810 0.70 +0.5
572,726 - ABZR87_RS18810 0.70 +2.7
572,726 - ABZR87_RS18810 0.70 +0.2
572,795 - ABZR87_RS18810 0.86 +0.2
572,901 + +0.7
572,901 + +0.7
572,908 - +2.6
572,964 + +0.6
572,964 + +0.6
572,964 + +1.1
572,974 + +0.4
572,974 + -0.5
572,974 + +0.2
572,974 + -0.2
572,988 - -0.5
573,015 + -0.2
573,016 - +1.1
573,158 - -0.3
573,158 - -0.6
573,451 + ABZR87_RS18815 0.29 -0.3
573,451 + ABZR87_RS18815 0.29 -1.1
573,451 + ABZR87_RS18815 0.29 -0.9
573,452 - ABZR87_RS18815 0.29 -1.3
573,452 - ABZR87_RS18815 0.29 +0.5
573,452 - ABZR87_RS18815 0.29 +0.3
573,452 - ABZR87_RS18815 0.29 +1.3
573,452 - ABZR87_RS18815 0.29 -0.7
573,516 + ABZR87_RS18815 0.33 +0.5
573,517 - ABZR87_RS18815 0.33 -1.6
573,722 - ABZR87_RS18815 0.48 +0.3

Or see this region's nucleotide sequence