Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17460

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17455 and ABZR87_RS17460 are separated by 171 nucleotidesABZR87_RS17460 and ABZR87_RS17465 are separated by 61 nucleotides ABZR87_RS17455: ABZR87_RS17455 - AraC family transcriptional regulator, at 274,870 to 275,886 _RS17455 ABZR87_RS17460: ABZR87_RS17460 - acyl-CoA dehydrogenase, at 276,058 to 277,191 _RS17460 ABZR87_RS17465: ABZR87_RS17465 - AMP-binding protein, at 277,253 to 278,947 _RS17465 Position (kb) 276 277 278Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 275.109 kb on + strand, within ABZR87_RS17455at 275.201 kb on + strand, within ABZR87_RS17455at 275.398 kb on - strand, within ABZR87_RS17455at 275.438 kb on + strand, within ABZR87_RS17455at 275.439 kb on - strand, within ABZR87_RS17455at 275.439 kb on - strand, within ABZR87_RS17455at 275.727 kb on - strand, within ABZR87_RS17455at 275.953 kb on - strandat 275.953 kb on - strandat 275.997 kb on + strandat 275.998 kb on - strandat 275.998 kb on - strandat 276.070 kb on + strandat 276.070 kb on + strandat 276.071 kb on - strandat 276.245 kb on - strand, within ABZR87_RS17460at 276.245 kb on - strand, within ABZR87_RS17460at 276.254 kb on - strand, within ABZR87_RS17460at 276.263 kb on - strand, within ABZR87_RS17460at 276.263 kb on - strand, within ABZR87_RS17460at 276.386 kb on - strand, within ABZR87_RS17460at 276.386 kb on - strand, within ABZR87_RS17460at 276.848 kb on - strand, within ABZR87_RS17460at 277.021 kb on + strand, within ABZR87_RS17460at 277.022 kb on - strand, within ABZR87_RS17460at 277.022 kb on - strand, within ABZR87_RS17460at 277.084 kb on + strandat 277.096 kb on + strandat 277.141 kb on + strandat 277.141 kb on + strandat 277.142 kb on - strandat 277.142 kb on - strandat 277.142 kb on - strandat 277.189 kb on + strandat 277.190 kb on - strandat 277.190 kb on - strandat 277.190 kb on - strandat 277.267 kb on - strandat 277.267 kb on - strandat 277.389 kb on - strandat 277.389 kb on - strandat 277.717 kb on + strand, within ABZR87_RS17465at 277.718 kb on - strand, within ABZR87_RS17465at 277.718 kb on - strand, within ABZR87_RS17465at 277.800 kb on - strand, within ABZR87_RS17465at 277.862 kb on + strand, within ABZR87_RS17465at 277.863 kb on - strand, within ABZR87_RS17465at 277.947 kb on - strand, within ABZR87_RS17465at 278.064 kb on - strand, within ABZR87_RS17465at 278.070 kb on - strand, within ABZR87_RS17465at 278.070 kb on - strand, within ABZR87_RS17465at 278.116 kb on + strand, within ABZR87_RS17465at 278.183 kb on + strand, within ABZR87_RS17465at 278.184 kb on - strand, within ABZR87_RS17465

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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275,109 + ABZR87_RS17455 0.24 -1.5
275,201 + ABZR87_RS17455 0.33 -2.6
275,398 - ABZR87_RS17455 0.52 -2.9
275,438 + ABZR87_RS17455 0.56 -1.7
275,439 - ABZR87_RS17455 0.56 -2.7
275,439 - ABZR87_RS17455 0.56 -2.9
275,727 - ABZR87_RS17455 0.84 -2.7
275,953 - -2.0
275,953 - +0.6
275,997 + +0.5
275,998 - -3.1
275,998 - -1.4
276,070 + -1.7
276,070 + -1.9
276,071 - -2.1
276,245 - ABZR87_RS17460 0.16 -1.1
276,245 - ABZR87_RS17460 0.16 -2.7
276,254 - ABZR87_RS17460 0.17 -1.7
276,263 - ABZR87_RS17460 0.18 -4.3
276,263 - ABZR87_RS17460 0.18 -2.9
276,386 - ABZR87_RS17460 0.29 -2.4
276,386 - ABZR87_RS17460 0.29 -2.6
276,848 - ABZR87_RS17460 0.70 -1.1
277,021 + ABZR87_RS17460 0.85 +2.9
277,022 - ABZR87_RS17460 0.85 -1.1
277,022 - ABZR87_RS17460 0.85 -2.1
277,084 + +2.0
277,096 + +1.7
277,141 + +0.4
277,141 + +2.4
277,142 - -2.0
277,142 - -0.7
277,142 - -2.1
277,189 + +0.1
277,190 - -1.4
277,190 - -2.6
277,190 - -3.9
277,267 - -2.7
277,267 - -1.3
277,389 - -4.4
277,389 - +1.9
277,717 + ABZR87_RS17465 0.27 -2.4
277,718 - ABZR87_RS17465 0.27 -3.0
277,718 - ABZR87_RS17465 0.27 -4.0
277,800 - ABZR87_RS17465 0.32 -1.9
277,862 + ABZR87_RS17465 0.36 -2.4
277,863 - ABZR87_RS17465 0.36 -1.9
277,947 - ABZR87_RS17465 0.41 -2.6
278,064 - ABZR87_RS17465 0.48 -1.4
278,070 - ABZR87_RS17465 0.48 -1.1
278,070 - ABZR87_RS17465 0.48 -1.4
278,116 + ABZR87_RS17465 0.51 +0.1
278,183 + ABZR87_RS17465 0.55 -2.1
278,184 - ABZR87_RS17465 0.55 -2.4

Or see this region's nucleotide sequence