Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17215

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17210 and ABZR87_RS17215 are separated by 985 nucleotidesABZR87_RS17215 and ABZR87_RS17220 overlap by 4 nucleotides ABZR87_RS17210: ABZR87_RS17210 - glycogen debranching protein GlgX, at 210,238 to 212,550 _RS17210 ABZR87_RS17215: ABZR87_RS17215 - 1,4-alpha-glucan branching protein GlgB, at 213,536 to 215,842 _RS17215 ABZR87_RS17220: ABZR87_RS17220 - maltose alpha-D-glucosyltransferase, at 215,839 to 219,333 _RS17220 Position (kb) 213 214 215 216Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 212.783 kb on + strandat 212.784 kb on - strandat 212.784 kb on - strandat 212.784 kb on - strandat 212.792 kb on + strandat 212.793 kb on - strandat 212.938 kb on + strandat 212.938 kb on + strandat 213.202 kb on + strandat 213.203 kb on - strandat 213.203 kb on - strandat 213.313 kb on - strandat 213.323 kb on - strandat 213.323 kb on - strandat 213.657 kb on + strandat 213.658 kb on - strandat 213.754 kb on + strandat 213.754 kb on + strandat 213.755 kb on - strandat 213.755 kb on - strandat 214.060 kb on - strand, within ABZR87_RS17215at 214.179 kb on + strand, within ABZR87_RS17215at 214.222 kb on - strand, within ABZR87_RS17215at 214.242 kb on + strand, within ABZR87_RS17215at 214.242 kb on + strand, within ABZR87_RS17215at 214.242 kb on + strand, within ABZR87_RS17215at 214.242 kb on + strand, within ABZR87_RS17215at 214.242 kb on + strand, within ABZR87_RS17215at 214.281 kb on + strand, within ABZR87_RS17215at 214.281 kb on + strand, within ABZR87_RS17215at 214.281 kb on + strand, within ABZR87_RS17215at 214.282 kb on - strand, within ABZR87_RS17215at 214.473 kb on + strand, within ABZR87_RS17215at 214.593 kb on + strand, within ABZR87_RS17215at 214.593 kb on + strand, within ABZR87_RS17215at 214.594 kb on - strand, within ABZR87_RS17215at 214.647 kb on + strand, within ABZR87_RS17215at 214.648 kb on - strand, within ABZR87_RS17215at 214.648 kb on - strand, within ABZR87_RS17215at 214.819 kb on - strand, within ABZR87_RS17215at 214.819 kb on - strand, within ABZR87_RS17215at 214.874 kb on - strand, within ABZR87_RS17215at 214.874 kb on - strand, within ABZR87_RS17215at 214.893 kb on + strand, within ABZR87_RS17215at 214.983 kb on + strand, within ABZR87_RS17215at 214.983 kb on + strand, within ABZR87_RS17215at 214.983 kb on + strand, within ABZR87_RS17215at 214.983 kb on + strand, within ABZR87_RS17215at 214.984 kb on - strand, within ABZR87_RS17215at 214.984 kb on - strand, within ABZR87_RS17215at 214.984 kb on - strand, within ABZR87_RS17215at 214.984 kb on - strand, within ABZR87_RS17215at 214.984 kb on - strand, within ABZR87_RS17215at 214.984 kb on - strand, within ABZR87_RS17215at 214.984 kb on - strand, within ABZR87_RS17215at 215.446 kb on - strand, within ABZR87_RS17215at 215.446 kb on - strand, within ABZR87_RS17215at 215.446 kb on - strand, within ABZR87_RS17215at 215.529 kb on + strand, within ABZR87_RS17215at 215.529 kb on + strand, within ABZR87_RS17215at 215.529 kb on + strand, within ABZR87_RS17215at 215.529 kb on + strand, within ABZR87_RS17215at 215.530 kb on - strand, within ABZR87_RS17215at 215.530 kb on - strand, within ABZR87_RS17215at 215.530 kb on - strand, within ABZR87_RS17215at 215.530 kb on - strand, within ABZR87_RS17215at 215.530 kb on - strand, within ABZR87_RS17215at 215.530 kb on - strand, within ABZR87_RS17215at 215.649 kb on + strandat 215.966 kb on + strandat 215.966 kb on + strandat 215.966 kb on + strandat 215.966 kb on + strandat 215.967 kb on + strandat 215.967 kb on - strandat 215.967 kb on - strandat 215.967 kb on - strandat 215.978 kb on + strandat 215.979 kb on - strandat 216.075 kb on - strandat 216.184 kb on + strandat 216.191 kb on + strand, within ABZR87_RS17220at 216.528 kb on - strand, within ABZR87_RS17220at 216.767 kb on + strand, within ABZR87_RS17220at 216.768 kb on - strand, within ABZR87_RS17220

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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212,783 + -1.7
212,784 - +1.3
212,784 - +0.1
212,784 - +1.3
212,792 + -0.4
212,793 - +1.3
212,938 + +0.2
212,938 + -0.2
213,202 + -0.3
213,203 - +1.3
213,203 - +0.5
213,313 - +0.2
213,323 - +0.1
213,323 - +0.5
213,657 + -3.5
213,658 - -2.2
213,754 + +0.5
213,754 + -2.1
213,755 - -0.4
213,755 - -0.1
214,060 - ABZR87_RS17215 0.23 +0.6
214,179 + ABZR87_RS17215 0.28 -4.8
214,222 - ABZR87_RS17215 0.30 +0.8
214,242 + ABZR87_RS17215 0.31 -2.7
214,242 + ABZR87_RS17215 0.31 -4.2
214,242 + ABZR87_RS17215 0.31 -3.6
214,242 + ABZR87_RS17215 0.31 -3.5
214,242 + ABZR87_RS17215 0.31 -2.7
214,281 + ABZR87_RS17215 0.32 -3.8
214,281 + ABZR87_RS17215 0.32 -4.1
214,281 + ABZR87_RS17215 0.32 -3.9
214,282 - ABZR87_RS17215 0.32 -0.7
214,473 + ABZR87_RS17215 0.41 -1.1
214,593 + ABZR87_RS17215 0.46 -4.7
214,593 + ABZR87_RS17215 0.46 -3.7
214,594 - ABZR87_RS17215 0.46 -0.3
214,647 + ABZR87_RS17215 0.48 -3.2
214,648 - ABZR87_RS17215 0.48 -0.6
214,648 - ABZR87_RS17215 0.48 -0.1
214,819 - ABZR87_RS17215 0.56 -1.2
214,819 - ABZR87_RS17215 0.56 -2.6
214,874 - ABZR87_RS17215 0.58 -1.9
214,874 - ABZR87_RS17215 0.58 -0.8
214,893 + ABZR87_RS17215 0.59 -2.8
214,983 + ABZR87_RS17215 0.63 -3.2
214,983 + ABZR87_RS17215 0.63 -3.5
214,983 + ABZR87_RS17215 0.63 -4.1
214,983 + ABZR87_RS17215 0.63 -2.4
214,984 - ABZR87_RS17215 0.63 -1.5
214,984 - ABZR87_RS17215 0.63 -3.4
214,984 - ABZR87_RS17215 0.63 -1.7
214,984 - ABZR87_RS17215 0.63 -0.4
214,984 - ABZR87_RS17215 0.63 -2.5
214,984 - ABZR87_RS17215 0.63 -2.5
214,984 - ABZR87_RS17215 0.63 -1.9
215,446 - ABZR87_RS17215 0.83 -1.2
215,446 - ABZR87_RS17215 0.83 -1.4
215,446 - ABZR87_RS17215 0.83 -1.6
215,529 + ABZR87_RS17215 0.86 -3.2
215,529 + ABZR87_RS17215 0.86 -3.5
215,529 + ABZR87_RS17215 0.86 -3.7
215,529 + ABZR87_RS17215 0.86 -1.7
215,530 - ABZR87_RS17215 0.86 -2.1
215,530 - ABZR87_RS17215 0.86 -2.4
215,530 - ABZR87_RS17215 0.86 -1.9
215,530 - ABZR87_RS17215 0.86 +1.3
215,530 - ABZR87_RS17215 0.86 -2.4
215,530 - ABZR87_RS17215 0.86 -1.6
215,649 + -4.6
215,966 + +1.6
215,966 + +0.5
215,966 + -1.1
215,966 + +0.4
215,967 + +0.1
215,967 - +0.4
215,967 - -0.6
215,967 - +0.5
215,978 + -0.4
215,979 - +1.5
216,075 - +1.3
216,184 + +0.4
216,191 + ABZR87_RS17220 0.10 -0.7
216,528 - ABZR87_RS17220 0.20 -0.9
216,767 + ABZR87_RS17220 0.27 -0.4
216,768 - ABZR87_RS17220 0.27 +1.3

Or see this region's nucleotide sequence