Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06985

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06975 and ABZR87_RS06980 are separated by 24 nucleotidesABZR87_RS06980 and ABZR87_RS06985 are separated by 170 nucleotidesABZR87_RS06985 and ABZR87_RS06990 are separated by 152 nucleotides ABZR87_RS06975: ABZR87_RS06975 - DUF4124 domain-containing protein, at 1,474,464 to 1,475,102 _RS06975 ABZR87_RS06980: ABZR87_RS06980 - aminoacyl-tRNA hydrolase, at 1,475,127 to 1,475,729 _RS06980 ABZR87_RS06985: ABZR87_RS06985 - 50S ribosomal protein L25/general stress protein Ctc, at 1,475,900 to 1,476,526 _RS06985 ABZR87_RS06990: ABZR87_RS06990 - ribose-phosphate pyrophosphokinase, at 1,476,679 to 1,477,629 _RS06990 Position (kb) 1475 1476 1477Strain fitness (log2 ratio) -2 -1 0 1at 1474.975 kb on + strand, within ABZR87_RS06975at 1474.975 kb on + strand, within ABZR87_RS06975at 1474.975 kb on + strand, within ABZR87_RS06975at 1474.976 kb on - strand, within ABZR87_RS06975at 1474.976 kb on - strand, within ABZR87_RS06975at 1474.976 kb on - strand, within ABZR87_RS06975at 1475.005 kb on + strand, within ABZR87_RS06975at 1475.117 kb on + strandat 1475.117 kb on + strandat 1475.117 kb on + strandat 1475.117 kb on + strandat 1475.118 kb on - strandat 1475.118 kb on - strandat 1475.118 kb on - strandat 1475.138 kb on + strandat 1475.138 kb on + strandat 1475.138 kb on + strandat 1475.738 kb on + strandat 1475.738 kb on + strandat 1475.773 kb on + strandat 1475.774 kb on - strandat 1475.781 kb on + strandat 1475.781 kb on + strandat 1475.781 kb on + strandat 1475.781 kb on + strandat 1475.781 kb on + strandat 1475.781 kb on + strandat 1475.781 kb on + strandat 1475.781 kb on + strandat 1475.782 kb on - strandat 1475.782 kb on - strandat 1475.782 kb on - strandat 1475.782 kb on - strandat 1475.782 kb on - strandat 1475.901 kb on + strandat 1475.902 kb on - strandat 1476.586 kb on - strandat 1476.660 kb on - strandat 1476.660 kb on - strandat 1476.680 kb on + strandat 1476.681 kb on - strandat 1476.681 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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1,474,975 + ABZR87_RS06975 0.80 -1.0
1,474,975 + ABZR87_RS06975 0.80 -0.8
1,474,975 + ABZR87_RS06975 0.80 +0.2
1,474,976 - ABZR87_RS06975 0.80 +0.5
1,474,976 - ABZR87_RS06975 0.80 +0.2
1,474,976 - ABZR87_RS06975 0.80 +0.6
1,475,005 + ABZR87_RS06975 0.85 -0.1
1,475,117 + +0.2
1,475,117 + +0.2
1,475,117 + +0.1
1,475,117 + -0.1
1,475,118 - +0.6
1,475,118 - -0.4
1,475,118 - -0.9
1,475,138 + -0.9
1,475,138 + -0.2
1,475,138 + +0.7
1,475,738 + -1.6
1,475,738 + -1.1
1,475,773 + +0.0
1,475,774 - -0.3
1,475,781 + +0.2
1,475,781 + -0.0
1,475,781 + +0.9
1,475,781 + -0.0
1,475,781 + -0.1
1,475,781 + -0.1
1,475,781 + +0.3
1,475,781 + +0.3
1,475,782 - +0.3
1,475,782 - +1.5
1,475,782 - -0.3
1,475,782 - +0.0
1,475,782 - -0.1
1,475,901 + -1.4
1,475,902 - -2.7
1,476,586 - -0.5
1,476,660 - +0.1
1,476,660 - +0.5
1,476,680 + +0.9
1,476,681 - -0.1
1,476,681 - -0.5

Or see this region's nucleotide sequence