Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01630 and ABZR87_RS01635 are separated by 78 nucleotides ABZR87_RS01635 and ABZR87_RS01640 are separated by 65 nucleotides ABZR87_RS01640 and ABZR87_RS01645 are separated by 181 nucleotides
ABZR87_RS01630: ABZR87_RS01630 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 342,323 to 343,708
_RS01630
ABZR87_RS01635: ABZR87_RS01635 - hypothetical protein, at 343,787 to 344,461
_RS01635
ABZR87_RS01640: ABZR87_RS01640 - TlpA disulfide reductase family protein, at 344,527 to 345,051
_RS01640
ABZR87_RS01645: ABZR87_RS01645 - type II 3-dehydroquinate dehydratase, at 345,233 to 345,700
_RS01645
Position (kb) 343
344
345 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 342.862 kb on + strand, within ABZR87_RS01630 at 342.862 kb on + strand, within ABZR87_RS01630 at 342.862 kb on + strand, within ABZR87_RS01630 at 342.862 kb on + strand, within ABZR87_RS01630 at 342.863 kb on - strand, within ABZR87_RS01630 at 342.868 kb on + strand, within ABZR87_RS01630 at 343.022 kb on + strand, within ABZR87_RS01630 at 343.156 kb on + strand, within ABZR87_RS01630 at 343.156 kb on + strand, within ABZR87_RS01630 at 343.163 kb on + strand, within ABZR87_RS01630 at 343.163 kb on + strand, within ABZR87_RS01630 at 343.163 kb on + strand, within ABZR87_RS01630 at 343.224 kb on + strand, within ABZR87_RS01630 at 343.224 kb on + strand, within ABZR87_RS01630 at 343.224 kb on + strand, within ABZR87_RS01630 at 343.225 kb on - strand, within ABZR87_RS01630 at 343.320 kb on + strand, within ABZR87_RS01630 at 343.321 kb on - strand, within ABZR87_RS01630 at 343.321 kb on - strand, within ABZR87_RS01630 at 343.468 kb on + strand, within ABZR87_RS01630 at 343.468 kb on + strand, within ABZR87_RS01630 at 343.515 kb on + strand, within ABZR87_RS01630 at 343.515 kb on + strand, within ABZR87_RS01630 at 343.515 kb on + strand, within ABZR87_RS01630 at 343.516 kb on - strand, within ABZR87_RS01630 at 343.605 kb on + strand at 343.702 kb on + strand at 343.702 kb on + strand at 343.703 kb on - strand at 343.703 kb on - strand at 343.703 kb on - strand at 343.703 kb on - strand at 343.729 kb on - strand at 343.741 kb on + strand at 343.741 kb on + strand at 343.741 kb on + strand at 343.741 kb on + strand at 343.742 kb on - strand at 343.742 kb on - strand at 343.742 kb on - strand at 343.742 kb on - strand at 343.742 kb on - strand at 343.742 kb on - strand at 343.775 kb on + strand at 343.776 kb on - strand at 343.776 kb on - strand at 343.776 kb on - strand at 343.776 kb on - strand at 343.780 kb on + strand at 343.780 kb on + strand at 343.781 kb on - strand at 343.781 kb on - strand at 343.878 kb on - strand, within ABZR87_RS01635 at 343.985 kb on + strand, within ABZR87_RS01635 at 343.986 kb on - strand, within ABZR87_RS01635 at 344.084 kb on + strand, within ABZR87_RS01635 at 344.084 kb on + strand, within ABZR87_RS01635 at 344.085 kb on - strand, within ABZR87_RS01635 at 344.085 kb on - strand, within ABZR87_RS01635 at 344.085 kb on - strand, within ABZR87_RS01635 at 344.350 kb on + strand, within ABZR87_RS01635 at 344.351 kb on - strand, within ABZR87_RS01635 at 344.351 kb on - strand, within ABZR87_RS01635 at 344.351 kb on - strand, within ABZR87_RS01635 at 344.360 kb on + strand, within ABZR87_RS01635 at 344.360 kb on + strand, within ABZR87_RS01635 at 344.360 kb on + strand, within ABZR87_RS01635 at 344.361 kb on + strand, within ABZR87_RS01635 at 344.361 kb on - strand, within ABZR87_RS01635 at 344.361 kb on - strand, within ABZR87_RS01635 at 344.361 kb on - strand, within ABZR87_RS01635 at 344.361 kb on - strand, within ABZR87_RS01635 at 344.361 kb on - strand, within ABZR87_RS01635 at 344.476 kb on + strand at 344.476 kb on + strand at 344.477 kb on - strand at 344.477 kb on - strand at 344.503 kb on + strand at 344.503 kb on + strand at 344.503 kb on + strand at 344.503 kb on + strand at 344.503 kb on + strand at 344.503 kb on + strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.653 kb on + strand, within ABZR87_RS01640 at 344.654 kb on - strand, within ABZR87_RS01640 at 344.654 kb on - strand, within ABZR87_RS01640 at 344.848 kb on - strand, within ABZR87_RS01640 at 344.959 kb on - strand, within ABZR87_RS01640 at 345.067 kb on + strand at 345.067 kb on + strand at 345.067 kb on + strand at 345.067 kb on + strand at 345.067 kb on + strand at 345.068 kb on - strand at 345.068 kb on - strand at 345.326 kb on + strand, within ABZR87_RS01645 at 345.326 kb on + strand, within ABZR87_RS01645 at 345.326 kb on + strand, within ABZR87_RS01645
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 342,862 + ABZR87_RS01630 0.39 +1.1 342,862 + ABZR87_RS01630 0.39 +0.3 342,862 + ABZR87_RS01630 0.39 +1.8 342,862 + ABZR87_RS01630 0.39 +0.2 342,863 - ABZR87_RS01630 0.39 +0.2 342,868 + ABZR87_RS01630 0.39 +0.5 343,022 + ABZR87_RS01630 0.50 +0.9 343,156 + ABZR87_RS01630 0.60 +0.7 343,156 + ABZR87_RS01630 0.60 +0.0 343,163 + ABZR87_RS01630 0.61 +0.2 343,163 + ABZR87_RS01630 0.61 +0.9 343,163 + ABZR87_RS01630 0.61 +0.1 343,224 + ABZR87_RS01630 0.65 +0.4 343,224 + ABZR87_RS01630 0.65 -0.1 343,224 + ABZR87_RS01630 0.65 -1.2 343,225 - ABZR87_RS01630 0.65 +0.6 343,320 + ABZR87_RS01630 0.72 +0.6 343,321 - ABZR87_RS01630 0.72 -0.1 343,321 - ABZR87_RS01630 0.72 +1.4 343,468 + ABZR87_RS01630 0.83 +0.4 343,468 + ABZR87_RS01630 0.83 +0.2 343,515 + ABZR87_RS01630 0.86 -0.3 343,515 + ABZR87_RS01630 0.86 +0.6 343,515 + ABZR87_RS01630 0.86 +0.3 343,516 - ABZR87_RS01630 0.86 -0.6 343,605 + +1.0 343,702 + -0.0 343,702 + -0.1 343,703 - -1.1 343,703 - -0.6 343,703 - +0.8 343,703 - +1.0 343,729 - +0.2 343,741 + +0.1 343,741 + -0.2 343,741 + +0.5 343,741 + +0.1 343,742 - -0.2 343,742 - +0.3 343,742 - -0.3 343,742 - +1.4 343,742 - +0.7 343,742 - -1.4 343,775 + -0.3 343,776 - -0.6 343,776 - +0.6 343,776 - +0.3 343,776 - -0.2 343,780 + +0.5 343,780 + -0.2 343,781 - -0.5 343,781 - +0.1 343,878 - ABZR87_RS01635 0.13 -1.4 343,985 + ABZR87_RS01635 0.29 +0.2 343,986 - ABZR87_RS01635 0.29 -1.0 344,084 + ABZR87_RS01635 0.44 +0.6 344,084 + ABZR87_RS01635 0.44 +0.7 344,085 - ABZR87_RS01635 0.44 +1.6 344,085 - ABZR87_RS01635 0.44 -0.1 344,085 - ABZR87_RS01635 0.44 -1.8 344,350 + ABZR87_RS01635 0.83 +0.1 344,351 - ABZR87_RS01635 0.84 -0.9 344,351 - ABZR87_RS01635 0.84 -0.1 344,351 - ABZR87_RS01635 0.84 -1.4 344,360 + ABZR87_RS01635 0.85 -0.5 344,360 + ABZR87_RS01635 0.85 -0.3 344,360 + ABZR87_RS01635 0.85 +0.4 344,361 + ABZR87_RS01635 0.85 -0.8 344,361 - ABZR87_RS01635 0.85 -0.3 344,361 - ABZR87_RS01635 0.85 -0.7 344,361 - ABZR87_RS01635 0.85 -0.3 344,361 - ABZR87_RS01635 0.85 -0.9 344,361 - ABZR87_RS01635 0.85 -0.4 344,476 + +0.3 344,476 + -0.7 344,477 - +0.2 344,477 - -0.6 344,503 + -0.6 344,503 + -1.1 344,503 + +0.4 344,503 + -0.2 344,503 + -0.2 344,503 + +0.1 344,504 - +0.5 344,504 - -0.5 344,504 - -0.5 344,504 - +0.4 344,504 - -0.6 344,504 - +0.3 344,504 - -0.7 344,504 - +0.1 344,504 - +0.6 344,504 - -0.5 344,504 - +1.6 344,504 - -1.3 344,504 - -0.2 344,505 + +1.3 344,505 + -0.1 344,505 + +1.4 344,505 + -0.4 344,505 + -0.1 344,505 + +1.6 344,505 + +0.1 344,505 + +0.3 344,505 + +1.2 344,505 + +0.4 344,505 + -1.3 344,505 + +0.5 344,505 + +0.4 344,505 + +0.8 344,505 + +0.6 344,505 + +0.7 344,505 + +0.3 344,505 + +0.4 344,506 - -0.0 344,506 - +0.5 344,506 - -0.2 344,506 - -1.0 344,506 - -2.4 344,506 - -0.0 344,506 - +0.6 344,506 - +0.1 344,506 - -1.5 344,506 - +0.3 344,506 - +0.2 344,506 - +0.3 344,506 - -0.1 344,506 - +0.2 344,506 - -0.1 344,506 - +0.4 344,506 - +1.1 344,506 - -0.5 344,507 + +0.5 344,507 + -0.5 344,507 + +0.4 344,507 + +1.3 344,507 + -0.1 344,507 + -0.2 344,507 + +0.1 344,507 + -0.6 344,507 + +0.2 344,507 + +4.4 344,507 + -0.0 344,507 + +0.8 344,507 + +0.2 344,507 + +0.4 344,507 + -0.0 344,507 + -0.4 344,507 + -0.9 344,507 + -0.1 344,507 + -0.0 344,507 + +1.2 344,507 + -0.4 344,507 + +1.1 344,507 + -0.6 344,507 + +0.4 344,507 + -0.7 344,507 + -0.6 344,507 + -1.4 344,508 - +0.1 344,508 - -1.2 344,508 - +0.5 344,508 - +0.5 344,508 - +2.4 344,508 - -0.6 344,508 - -1.5 344,508 - +0.6 344,508 - +0.6 344,508 - +0.5 344,508 - +0.8 344,508 - -0.9 344,508 - -0.1 344,508 - -1.1 344,508 - -0.4 344,508 - -2.7 344,508 - +0.0 344,508 - +0.5 344,508 - +0.0 344,508 - -1.3 344,509 + -0.5 344,509 + -0.7 344,509 + -1.0 344,509 + -0.6 344,509 + -0.3 344,509 + -0.9 344,509 + +0.7 344,509 + +0.0 344,509 + -0.0 344,509 + +1.0 344,509 + -0.2 344,509 + -0.2 344,509 + -0.8 344,509 + +0.5 344,509 + -0.1 344,510 - -0.1 344,510 - -0.6 344,510 - +0.2 344,510 - +0.7 344,510 - -0.3 344,510 - -0.2 344,510 - -1.4 344,510 - -0.9 344,510 - +0.1 344,510 - +2.1 344,510 - -0.4 344,510 - -0.1 344,510 - +0.3 344,510 - +0.7 344,510 - +0.3 344,510 - +1.6 344,510 - +0.3 344,510 - -0.8 344,510 - -0.3 344,510 - +0.1 344,510 - -0.5 344,510 - +0.5 344,510 - -0.3 344,510 - +0.4 344,510 - +0.6 344,653 + ABZR87_RS01640 0.24 -1.0 344,654 - ABZR87_RS01640 0.24 -0.7 344,654 - ABZR87_RS01640 0.24 -0.7 344,848 - ABZR87_RS01640 0.61 -0.7 344,959 - ABZR87_RS01640 0.82 -1.2 345,067 + -1.1 345,067 + -1.1 345,067 + -1.4 345,067 + -0.3 345,067 + +0.1 345,068 - -0.0 345,068 - -0.6 345,326 + ABZR87_RS01645 0.20 -2.9 345,326 + ABZR87_RS01645 0.20 -1.4 345,326 + ABZR87_RS01645 0.20 -0.7
Or see this region's nucleotide sequence