Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00985 and ABZR87_RS00990 are separated by 329 nucleotides ABZR87_RS00990 and ABZR87_RS00995 are separated by 13 nucleotides ABZR87_RS00995 and ABZR87_RS01000 are separated by 262 nucleotides ABZR87_RS01000 and ABZR87_RS01005 are separated by 21 nucleotides ABZR87_RS01005 and ABZR87_RS01010 overlap by 4 nucleotides
ABZR87_RS00985: ABZR87_RS00985 - nucleoside diphosphate kinase regulator, at 197,737 to 198,144
_RS00985
ABZR87_RS00990: ABZR87_RS00990 - thioredoxin family protein, at 198,474 to 198,899
_RS00990
ABZR87_RS00995: ABZR87_RS00995 - nucleotide exchange factor GrpE, at 198,913 to 199,560
_RS00995
ABZR87_RS01000: ABZR87_RS01000 - hypothetical protein, at 199,823 to 200,020
_RS01000
ABZR87_RS01005: ABZR87_RS01005 - RNA-binding S4 domain-containing protein, at 200,042 to 200,440
_RS01005
ABZR87_RS01010: ABZR87_RS01010 - ferrochelatase, at 200,437 to 201,552
_RS01010
Position (kb) 198
199
200 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.155 kb on + strand at 198.155 kb on + strand at 198.155 kb on + strand at 198.155 kb on + strand at 198.156 kb on - strand at 198.156 kb on - strand at 198.156 kb on - strand at 198.257 kb on + strand at 198.258 kb on + strand at 198.258 kb on + strand at 198.259 kb on - strand at 198.259 kb on - strand at 198.261 kb on + strand at 198.261 kb on + strand at 198.261 kb on + strand at 198.261 kb on + strand at 198.261 kb on + strand at 198.261 kb on + strand at 198.262 kb on - strand at 198.262 kb on - strand at 198.262 kb on - strand at 198.262 kb on - strand at 198.262 kb on - strand at 198.262 kb on - strand at 198.269 kb on - strand at 198.322 kb on - strand at 198.322 kb on - strand at 198.322 kb on - strand at 198.603 kb on - strand, within ABZR87_RS00990 at 198.603 kb on - strand, within ABZR87_RS00990 at 198.643 kb on + strand, within ABZR87_RS00990 at 198.643 kb on + strand, within ABZR87_RS00990 at 198.643 kb on + strand, within ABZR87_RS00990 at 198.643 kb on + strand, within ABZR87_RS00990 at 198.643 kb on + strand, within ABZR87_RS00990 at 198.644 kb on - strand, within ABZR87_RS00990 at 198.644 kb on - strand, within ABZR87_RS00990 at 198.644 kb on - strand, within ABZR87_RS00990 at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand at 199.560 kb on + strand at 199.560 kb on + strand at 199.560 kb on + strand at 199.560 kb on + strand at 199.561 kb on - strand at 199.571 kb on - strand at 199.590 kb on + strand at 199.590 kb on + strand at 199.590 kb on + strand at 199.590 kb on + strand at 199.590 kb on + strand at 199.591 kb on - strand at 199.591 kb on - strand at 199.591 kb on - strand at 199.591 kb on - strand at 199.620 kb on + strand at 199.620 kb on + strand at 199.621 kb on - strand at 199.640 kb on + strand at 199.708 kb on + strand at 199.708 kb on + strand at 199.709 kb on - strand at 199.709 kb on - strand at 199.716 kb on + strand at 199.716 kb on + strand at 199.716 kb on + strand at 199.716 kb on + strand at 199.716 kb on + strand at 199.717 kb on - strand at 199.717 kb on - strand at 199.717 kb on - strand at 199.717 kb on - strand at 199.772 kb on + strand at 199.772 kb on + strand at 199.772 kb on + strand at 199.773 kb on - strand at 199.773 kb on - strand at 199.820 kb on - strand at 199.820 kb on - strand at 199.820 kb on - strand at 199.820 kb on - strand at 199.919 kb on + strand, within ABZR87_RS01000 at 199.920 kb on - strand, within ABZR87_RS01000 at 199.920 kb on - strand, within ABZR87_RS01000 at 199.921 kb on + strand, within ABZR87_RS01000 at 199.921 kb on + strand, within ABZR87_RS01000 at 199.921 kb on + strand, within ABZR87_RS01000 at 199.921 kb on + strand, within ABZR87_RS01000 at 199.921 kb on + strand, within ABZR87_RS01000 at 199.921 kb on + strand, within ABZR87_RS01000 at 199.921 kb on + strand, within ABZR87_RS01000 at 199.922 kb on - strand, within ABZR87_RS01000 at 199.922 kb on - strand, within ABZR87_RS01000 at 199.922 kb on - strand, within ABZR87_RS01000 at 199.929 kb on - strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.959 kb on - strand, within ABZR87_RS01000 at 199.959 kb on - strand, within ABZR87_RS01000 at 199.959 kb on - strand, within ABZR87_RS01000 at 199.959 kb on - strand, within ABZR87_RS01000 at 199.959 kb on - strand, within ABZR87_RS01000 at 199.959 kb on - strand, within ABZR87_RS01000 at 200.010 kb on + strand at 200.011 kb on - strand at 200.018 kb on + strand at 200.018 kb on + strand at 200.019 kb on - strand at 200.156 kb on + strand, within ABZR87_RS01005 at 200.181 kb on + strand, within ABZR87_RS01005 at 200.181 kb on + strand, within ABZR87_RS01005 at 200.181 kb on + strand, within ABZR87_RS01005
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 198,122 + +0.7 198,122 + -0.8 198,122 + +0.1 198,122 + +0.7 198,122 + +1.2 198,122 + +0.4 198,122 + +1.8 198,122 + +0.6 198,122 + +0.8 198,123 - +0.5 198,123 - +1.3 198,123 - +0.3 198,123 - +2.0 198,123 - -0.8 198,123 - +0.7 198,123 - +0.2 198,155 + +0.6 198,155 + +0.5 198,155 + -0.2 198,155 + -0.0 198,156 - -0.1 198,156 - +0.3 198,156 - -0.6 198,257 + +0.0 198,258 + +0.4 198,258 + +0.5 198,259 - -1.3 198,259 - -0.3 198,261 + +2.0 198,261 + +0.4 198,261 + +0.5 198,261 + +0.7 198,261 + +0.1 198,261 + -0.4 198,262 - -1.1 198,262 - -3.3 198,262 - -1.7 198,262 - -2.5 198,262 - -1.0 198,262 - +1.0 198,269 - -1.6 198,322 - -1.2 198,322 - -0.6 198,322 - -2.4 198,603 - ABZR87_RS00990 0.30 -1.8 198,603 - ABZR87_RS00990 0.30 -1.0 198,643 + ABZR87_RS00990 0.40 +0.5 198,643 + ABZR87_RS00990 0.40 +1.1 198,643 + ABZR87_RS00990 0.40 -0.1 198,643 + ABZR87_RS00990 0.40 +0.5 198,643 + ABZR87_RS00990 0.40 +0.2 198,644 - ABZR87_RS00990 0.40 -0.5 198,644 - ABZR87_RS00990 0.40 -0.1 198,644 - ABZR87_RS00990 0.40 +0.1 198,914 + -0.7 198,914 + +1.1 198,914 + +0.9 198,914 + +0.1 198,914 + +1.0 198,914 + +1.0 198,914 + -1.0 198,914 + +1.1 198,915 - -1.0 198,915 - -0.4 198,915 - +0.4 198,915 - -0.1 198,915 - +0.2 198,915 - -1.2 198,915 - +0.7 198,915 - +0.3 199,560 + -1.2 199,560 + +1.5 199,560 + +0.3 199,560 + -0.8 199,561 - -0.7 199,571 - -0.2 199,590 + +0.1 199,590 + +2.3 199,590 + -0.1 199,590 + +1.3 199,590 + -0.3 199,591 - -0.6 199,591 - +1.6 199,591 - -0.3 199,591 - -1.3 199,620 + -0.4 199,620 + +0.3 199,621 - -0.5 199,640 + +0.5 199,708 + +1.2 199,708 + +1.6 199,709 - -0.3 199,709 - -0.9 199,716 + +0.6 199,716 + +0.8 199,716 + +0.2 199,716 + +1.1 199,716 + -0.5 199,717 - +0.4 199,717 - +0.1 199,717 - -0.2 199,717 - -0.9 199,772 + -1.8 199,772 + +0.6 199,772 + +0.1 199,773 - -0.0 199,773 - -0.9 199,820 - +0.5 199,820 - -0.2 199,820 - +0.3 199,820 - +0.6 199,919 + ABZR87_RS01000 0.48 +0.6 199,920 - ABZR87_RS01000 0.49 +0.7 199,920 - ABZR87_RS01000 0.49 -0.3 199,921 + ABZR87_RS01000 0.49 +0.2 199,921 + ABZR87_RS01000 0.49 -0.1 199,921 + ABZR87_RS01000 0.49 -0.8 199,921 + ABZR87_RS01000 0.49 +0.6 199,921 + ABZR87_RS01000 0.49 +0.7 199,921 + ABZR87_RS01000 0.49 +0.7 199,921 + ABZR87_RS01000 0.49 +0.3 199,922 - ABZR87_RS01000 0.50 +0.5 199,922 - ABZR87_RS01000 0.50 +1.0 199,922 - ABZR87_RS01000 0.50 -0.4 199,929 - ABZR87_RS01000 0.54 -1.0 199,958 + ABZR87_RS01000 0.68 +0.2 199,958 + ABZR87_RS01000 0.68 +0.2 199,958 + ABZR87_RS01000 0.68 +1.4 199,958 + ABZR87_RS01000 0.68 +0.6 199,958 + ABZR87_RS01000 0.68 +0.3 199,958 + ABZR87_RS01000 0.68 -0.2 199,958 + ABZR87_RS01000 0.68 -0.4 199,958 + ABZR87_RS01000 0.68 -0.3 199,958 + ABZR87_RS01000 0.68 +1.2 199,958 + ABZR87_RS01000 0.68 -0.3 199,958 + ABZR87_RS01000 0.68 -0.3 199,959 - ABZR87_RS01000 0.69 -0.1 199,959 - ABZR87_RS01000 0.69 -0.1 199,959 - ABZR87_RS01000 0.69 -0.9 199,959 - ABZR87_RS01000 0.69 -0.7 199,959 - ABZR87_RS01000 0.69 -0.6 199,959 - ABZR87_RS01000 0.69 +1.4 200,010 + +0.4 200,011 - -0.2 200,018 + +0.3 200,018 + +0.6 200,019 - +1.4 200,156 + ABZR87_RS01005 0.29 +0.9 200,181 + ABZR87_RS01005 0.35 +0.5 200,181 + ABZR87_RS01005 0.35 +0.1 200,181 + ABZR87_RS01005 0.35 -0.4
Or see this region's nucleotide sequence