Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00345 and ABZR87_RS00350 are separated by 9 nucleotides ABZR87_RS00350 and ABZR87_RS00355 overlap by 4 nucleotides ABZR87_RS00355 and ABZR87_RS00360 are separated by 187 nucleotides
ABZR87_RS00345: ABZR87_RS00345 - L-aspartate oxidase, at 68,721 to 70,322
_RS00345
ABZR87_RS00350: ABZR87_RS00350 - carboxylating nicotinate-nucleotide diphosphorylase, at 70,332 to 71,231
_RS00350
ABZR87_RS00355: ABZR87_RS00355 - quinolinate synthase NadA, at 71,228 to 72,376
_RS00355
ABZR87_RS00360: ABZR87_RS00360 - acyl-CoA desaturase, at 72,564 to 73,754
_RS00360
Position (kb) 71
72
73 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 70.333 kb on + strand at 70.334 kb on - strand at 70.690 kb on + strand, within ABZR87_RS00350 at 70.691 kb on - strand, within ABZR87_RS00350 at 70.691 kb on - strand, within ABZR87_RS00350 at 70.691 kb on - strand, within ABZR87_RS00350 at 70.691 kb on - strand, within ABZR87_RS00350 at 70.691 kb on - strand, within ABZR87_RS00350 at 70.735 kb on + strand, within ABZR87_RS00350 at 70.735 kb on + strand, within ABZR87_RS00350 at 70.735 kb on + strand, within ABZR87_RS00350 at 70.735 kb on + strand, within ABZR87_RS00350 at 70.735 kb on + strand, within ABZR87_RS00350 at 70.736 kb on - strand, within ABZR87_RS00350 at 70.736 kb on - strand, within ABZR87_RS00350 at 71.778 kb on + strand, within ABZR87_RS00355 at 71.778 kb on + strand, within ABZR87_RS00355 at 71.779 kb on - strand, within ABZR87_RS00355 at 71.779 kb on - strand, within ABZR87_RS00355 at 71.779 kb on - strand, within ABZR87_RS00355 at 71.906 kb on - strand, within ABZR87_RS00355 at 71.913 kb on + strand, within ABZR87_RS00355 at 71.913 kb on + strand, within ABZR87_RS00355 at 71.913 kb on + strand, within ABZR87_RS00355 at 71.914 kb on - strand, within ABZR87_RS00355 at 71.914 kb on - strand, within ABZR87_RS00355 at 72.183 kb on + strand, within ABZR87_RS00355 at 72.183 kb on + strand, within ABZR87_RS00355 at 72.183 kb on + strand, within ABZR87_RS00355 at 72.183 kb on + strand, within ABZR87_RS00355 at 72.183 kb on + strand, within ABZR87_RS00355 at 72.183 kb on + strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.186 kb on + strand, within ABZR87_RS00355 at 72.186 kb on + strand, within ABZR87_RS00355 at 72.187 kb on - strand, within ABZR87_RS00355 at 72.187 kb on - strand, within ABZR87_RS00355 at 72.187 kb on - strand, within ABZR87_RS00355 at 72.187 kb on - strand, within ABZR87_RS00355 at 72.468 kb on + strand at 72.468 kb on + strand at 72.486 kb on + strand at 72.486 kb on + strand at 72.549 kb on + strand at 72.549 kb on + strand at 72.549 kb on + strand at 72.550 kb on - strand at 72.880 kb on + strand, within ABZR87_RS00360 at 73.043 kb on - strand, within ABZR87_RS00360 at 73.100 kb on - strand, within ABZR87_RS00360
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 70,333 + +0.2 70,334 - -0.4 70,690 + ABZR87_RS00350 0.40 -3.3 70,691 - ABZR87_RS00350 0.40 -1.8 70,691 - ABZR87_RS00350 0.40 -3.2 70,691 - ABZR87_RS00350 0.40 -2.0 70,691 - ABZR87_RS00350 0.40 -1.4 70,691 - ABZR87_RS00350 0.40 -0.0 70,735 + ABZR87_RS00350 0.45 -1.9 70,735 + ABZR87_RS00350 0.45 -0.6 70,735 + ABZR87_RS00350 0.45 -2.5 70,735 + ABZR87_RS00350 0.45 +0.3 70,735 + ABZR87_RS00350 0.45 -1.5 70,736 - ABZR87_RS00350 0.45 -1.8 70,736 - ABZR87_RS00350 0.45 -0.0 71,778 + ABZR87_RS00355 0.48 -2.1 71,778 + ABZR87_RS00355 0.48 -2.4 71,779 - ABZR87_RS00355 0.48 -2.2 71,779 - ABZR87_RS00355 0.48 -1.6 71,779 - ABZR87_RS00355 0.48 -2.8 71,906 - ABZR87_RS00355 0.59 -1.0 71,913 + ABZR87_RS00355 0.60 -1.8 71,913 + ABZR87_RS00355 0.60 -1.2 71,913 + ABZR87_RS00355 0.60 -1.8 71,914 - ABZR87_RS00355 0.60 -1.3 71,914 - ABZR87_RS00355 0.60 -1.1 72,183 + ABZR87_RS00355 0.83 -3.6 72,183 + ABZR87_RS00355 0.83 -2.6 72,183 + ABZR87_RS00355 0.83 -0.6 72,183 + ABZR87_RS00355 0.83 -0.6 72,183 + ABZR87_RS00355 0.83 -0.8 72,183 + ABZR87_RS00355 0.83 -1.4 72,184 - ABZR87_RS00355 0.83 -0.3 72,184 - ABZR87_RS00355 0.83 -1.0 72,184 - ABZR87_RS00355 0.83 -2.0 72,184 - ABZR87_RS00355 0.83 -2.2 72,184 - ABZR87_RS00355 0.83 -1.3 72,184 - ABZR87_RS00355 0.83 -1.2 72,184 - ABZR87_RS00355 0.83 -1.5 72,184 - ABZR87_RS00355 0.83 -0.9 72,184 - ABZR87_RS00355 0.83 -1.5 72,184 - ABZR87_RS00355 0.83 -1.6 72,184 - ABZR87_RS00355 0.83 -2.5 72,186 + ABZR87_RS00355 0.83 -1.9 72,186 + ABZR87_RS00355 0.83 -1.0 72,187 - ABZR87_RS00355 0.83 -0.7 72,187 - ABZR87_RS00355 0.83 -1.8 72,187 - ABZR87_RS00355 0.83 -1.5 72,187 - ABZR87_RS00355 0.83 -2.9 72,468 + +0.0 72,468 + -0.5 72,486 + -2.9 72,486 + -0.2 72,549 + +0.2 72,549 + +0.6 72,549 + -1.4 72,550 - +0.8 72,880 + ABZR87_RS00360 0.27 -0.6 73,043 - ABZR87_RS00360 0.40 -2.0 73,100 - ABZR87_RS00360 0.45 +1.0
Or see this region's nucleotide sequence