Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18140 and ABZR87_RS18145 are separated by 24 nucleotides ABZR87_RS18145 and ABZR87_RS18150 are separated by 110 nucleotides ABZR87_RS18150 and ABZR87_RS18155 are separated by 8 nucleotides
ABZR87_RS18140: ABZR87_RS18140 - type III secretion system export apparatus subunit SctR, at 433,673 to 434,332
_RS18140
ABZR87_RS18145: ABZR87_RS18145 - lytic transglycosylase domain-containing protein, at 434,357 to 435,109
_RS18145
ABZR87_RS18150: ABZR87_RS18150 - LuxR family transcriptional regulator, at 435,220 to 436,107
_RS18150
ABZR87_RS18155: ABZR87_RS18155 - LysR family transcriptional regulator, at 436,116 to 437,231
_RS18155
Position (kb) 435
436
437 Strain fitness (log2 ratio) -1
0
1
2 at 434.325 kb on - strand at 434.630 kb on + strand, within ABZR87_RS18145 at 434.631 kb on - strand, within ABZR87_RS18145 at 434.820 kb on - strand, within ABZR87_RS18145 at 434.858 kb on + strand, within ABZR87_RS18145 at 435.168 kb on + strand at 435.168 kb on + strand at 435.169 kb on + strand at 435.185 kb on - strand at 435.185 kb on - strand at 435.238 kb on - strand at 435.425 kb on - strand, within ABZR87_RS18150 at 435.484 kb on + strand, within ABZR87_RS18150 at 435.541 kb on + strand, within ABZR87_RS18150 at 435.542 kb on - strand, within ABZR87_RS18150 at 435.568 kb on + strand, within ABZR87_RS18150 at 435.568 kb on + strand, within ABZR87_RS18150 at 435.583 kb on + strand, within ABZR87_RS18150 at 435.583 kb on + strand, within ABZR87_RS18150 at 435.584 kb on - strand, within ABZR87_RS18150 at 435.748 kb on + strand, within ABZR87_RS18150 at 435.748 kb on + strand, within ABZR87_RS18150 at 435.749 kb on - strand, within ABZR87_RS18150 at 435.749 kb on - strand, within ABZR87_RS18150 at 435.749 kb on - strand, within ABZR87_RS18150 at 435.878 kb on - strand, within ABZR87_RS18150 at 435.889 kb on + strand, within ABZR87_RS18150 at 436.031 kb on - strand at 436.100 kb on - strand at 436.106 kb on - strand at 436.192 kb on - strand at 436.192 kb on - strand at 436.299 kb on - strand, within ABZR87_RS18155 at 436.361 kb on - strand, within ABZR87_RS18155 at 436.433 kb on + strand, within ABZR87_RS18155 at 436.433 kb on + strand, within ABZR87_RS18155 at 436.434 kb on - strand, within ABZR87_RS18155 at 436.895 kb on + strand, within ABZR87_RS18155 at 436.895 kb on + strand, within ABZR87_RS18155 at 436.895 kb on + strand, within ABZR87_RS18155 at 436.895 kb on + strand, within ABZR87_RS18155 at 436.896 kb on - strand, within ABZR87_RS18155 at 436.896 kb on - strand, within ABZR87_RS18155 at 436.897 kb on + strand, within ABZR87_RS18155 at 436.897 kb on + strand, within ABZR87_RS18155 at 436.898 kb on - strand, within ABZR87_RS18155
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 434,325 - +0.2 434,630 + ABZR87_RS18145 0.36 +0.7 434,631 - ABZR87_RS18145 0.36 +0.5 434,820 - ABZR87_RS18145 0.61 -0.5 434,858 + ABZR87_RS18145 0.67 +0.1 435,168 + -1.0 435,168 + -0.1 435,169 + +0.5 435,185 - -0.4 435,185 - -0.0 435,238 - +2.3 435,425 - ABZR87_RS18150 0.23 -1.6 435,484 + ABZR87_RS18150 0.30 -0.7 435,541 + ABZR87_RS18150 0.36 -0.6 435,542 - ABZR87_RS18150 0.36 +0.3 435,568 + ABZR87_RS18150 0.39 -0.4 435,568 + ABZR87_RS18150 0.39 -0.6 435,583 + ABZR87_RS18150 0.41 -0.5 435,583 + ABZR87_RS18150 0.41 -0.0 435,584 - ABZR87_RS18150 0.41 +0.8 435,748 + ABZR87_RS18150 0.59 +0.2 435,748 + ABZR87_RS18150 0.59 +0.7 435,749 - ABZR87_RS18150 0.60 -0.6 435,749 - ABZR87_RS18150 0.60 -1.0 435,749 - ABZR87_RS18150 0.60 -0.3 435,878 - ABZR87_RS18150 0.74 +0.6 435,889 + ABZR87_RS18150 0.75 +0.9 436,031 - +0.2 436,100 - +0.3 436,106 - +0.9 436,192 - +0.7 436,192 - +0.2 436,299 - ABZR87_RS18155 0.16 -0.2 436,361 - ABZR87_RS18155 0.22 -0.4 436,433 + ABZR87_RS18155 0.28 -0.1 436,433 + ABZR87_RS18155 0.28 -1.2 436,434 - ABZR87_RS18155 0.28 -1.4 436,895 + ABZR87_RS18155 0.70 -1.0 436,895 + ABZR87_RS18155 0.70 +0.4 436,895 + ABZR87_RS18155 0.70 +0.1 436,895 + ABZR87_RS18155 0.70 +0.1 436,896 - ABZR87_RS18155 0.70 -0.3 436,896 - ABZR87_RS18155 0.70 -0.2 436,897 + ABZR87_RS18155 0.70 -1.0 436,897 + ABZR87_RS18155 0.70 -0.0 436,898 - ABZR87_RS18155 0.70 -0.0
Or see this region's nucleotide sequence