Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14150

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS14140 and ABZR87_RS14145 are separated by 16 nucleotidesABZR87_RS14145 and ABZR87_RS14150 are separated by 21 nucleotidesABZR87_RS14150 and ABZR87_RS14155 are separated by 347 nucleotides ABZR87_RS14140: ABZR87_RS14140 - carbamoyl-phosphate synthase large subunit, at 2,984,202 to 2,987,447 _RS14140 ABZR87_RS14145: ABZR87_RS14145 - leucine efflux protein LeuE, at 2,987,464 to 2,988,138 _RS14145 ABZR87_RS14150: ABZR87_RS14150 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 2,988,160 to 2,989,296 _RS14150 ABZR87_RS14155: ABZR87_RS14155 - propionate--CoA ligase, at 2,989,644 to 2,991,545 _RS14155 Position (kb) 2988 2989 2990Strain fitness (log2 ratio) -1 0 1 2 3at 2987.532 kb on + strand, within ABZR87_RS14145at 2987.533 kb on - strand, within ABZR87_RS14145at 2987.607 kb on - strand, within ABZR87_RS14145at 2987.607 kb on - strand, within ABZR87_RS14145at 2987.617 kb on - strand, within ABZR87_RS14145at 2987.871 kb on - strand, within ABZR87_RS14145at 2987.886 kb on - strand, within ABZR87_RS14145at 2987.886 kb on - strand, within ABZR87_RS14145at 2987.886 kb on - strand, within ABZR87_RS14145at 2987.898 kb on - strand, within ABZR87_RS14145at 2987.898 kb on - strand, within ABZR87_RS14145at 2988.038 kb on + strand, within ABZR87_RS14145at 2988.039 kb on - strand, within ABZR87_RS14145at 2988.039 kb on - strand, within ABZR87_RS14145at 2988.161 kb on + strandat 2988.161 kb on + strandat 2988.162 kb on - strandat 2988.162 kb on - strandat 2988.162 kb on - strandat 2989.515 kb on + strandat 2989.555 kb on - strandat 2989.753 kb on - strandat 2989.753 kb on - strandat 2989.753 kb on - strandat 2989.753 kb on - strandat 2990.074 kb on + strand, within ABZR87_RS14155at 2990.074 kb on + strand, within ABZR87_RS14155at 2990.074 kb on + strand, within ABZR87_RS14155at 2990.074 kb on + strand, within ABZR87_RS14155at 2990.074 kb on + strand, within ABZR87_RS14155at 2990.074 kb on + strand, within ABZR87_RS14155at 2990.074 kb on + strand, within ABZR87_RS14155at 2990.075 kb on - strand, within ABZR87_RS14155at 2990.075 kb on - strand, within ABZR87_RS14155at 2990.113 kb on + strand, within ABZR87_RS14155at 2990.113 kb on + strand, within ABZR87_RS14155at 2990.114 kb on - strand, within ABZR87_RS14155at 2990.143 kb on + strand, within ABZR87_RS14155at 2990.143 kb on + strand, within ABZR87_RS14155at 2990.143 kb on + strand, within ABZR87_RS14155at 2990.143 kb on + strand, within ABZR87_RS14155at 2990.144 kb on - strand, within ABZR87_RS14155at 2990.144 kb on - strand, within ABZR87_RS14155at 2990.281 kb on + strand, within ABZR87_RS14155at 2990.281 kb on + strand, within ABZR87_RS14155at 2990.281 kb on + strand, within ABZR87_RS14155at 2990.282 kb on - strand, within ABZR87_RS14155at 2990.282 kb on - strand, within ABZR87_RS14155at 2990.282 kb on - strand, within ABZR87_RS14155at 2990.287 kb on + strand, within ABZR87_RS14155at 2990.287 kb on + strand, within ABZR87_RS14155at 2990.287 kb on + strand, within ABZR87_RS14155at 2990.288 kb on - strand, within ABZR87_RS14155at 2990.288 kb on - strand, within ABZR87_RS14155at 2990.288 kb on - strand, within ABZR87_RS14155

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
2,987,532 + ABZR87_RS14145 0.10 +0.9
2,987,533 - ABZR87_RS14145 0.10 +0.4
2,987,607 - ABZR87_RS14145 0.21 +1.6
2,987,607 - ABZR87_RS14145 0.21 +0.4
2,987,617 - ABZR87_RS14145 0.23 +1.2
2,987,871 - ABZR87_RS14145 0.60 +0.1
2,987,886 - ABZR87_RS14145 0.63 +1.5
2,987,886 - ABZR87_RS14145 0.63 -0.8
2,987,886 - ABZR87_RS14145 0.63 +0.1
2,987,898 - ABZR87_RS14145 0.64 -0.2
2,987,898 - ABZR87_RS14145 0.64 +2.1
2,988,038 + ABZR87_RS14145 0.85 +0.9
2,988,039 - ABZR87_RS14145 0.85 -0.3
2,988,039 - ABZR87_RS14145 0.85 +0.1
2,988,161 + -0.7
2,988,161 + +3.5
2,988,162 - +0.7
2,988,162 - +0.2
2,988,162 - -0.6
2,989,515 + -0.7
2,989,555 - -0.6
2,989,753 - -0.1
2,989,753 - -0.2
2,989,753 - -0.7
2,989,753 - +0.0
2,990,074 + ABZR87_RS14155 0.23 -0.5
2,990,074 + ABZR87_RS14155 0.23 +0.6
2,990,074 + ABZR87_RS14155 0.23 +0.1
2,990,074 + ABZR87_RS14155 0.23 +0.7
2,990,074 + ABZR87_RS14155 0.23 -0.2
2,990,074 + ABZR87_RS14155 0.23 -0.3
2,990,074 + ABZR87_RS14155 0.23 -0.5
2,990,075 - ABZR87_RS14155 0.23 -0.4
2,990,075 - ABZR87_RS14155 0.23 -0.6
2,990,113 + ABZR87_RS14155 0.25 -0.1
2,990,113 + ABZR87_RS14155 0.25 -0.7
2,990,114 - ABZR87_RS14155 0.25 +0.6
2,990,143 + ABZR87_RS14155 0.26 +0.7
2,990,143 + ABZR87_RS14155 0.26 +0.9
2,990,143 + ABZR87_RS14155 0.26 -1.0
2,990,143 + ABZR87_RS14155 0.26 -1.2
2,990,144 - ABZR87_RS14155 0.26 +0.7
2,990,144 - ABZR87_RS14155 0.26 -0.6
2,990,281 + ABZR87_RS14155 0.33 +0.1
2,990,281 + ABZR87_RS14155 0.33 +0.3
2,990,281 + ABZR87_RS14155 0.33 +0.5
2,990,282 - ABZR87_RS14155 0.34 +1.1
2,990,282 - ABZR87_RS14155 0.34 -0.1
2,990,282 - ABZR87_RS14155 0.34 -0.3
2,990,287 + ABZR87_RS14155 0.34 -0.4
2,990,287 + ABZR87_RS14155 0.34 -0.3
2,990,287 + ABZR87_RS14155 0.34 -0.7
2,990,288 - ABZR87_RS14155 0.34 +0.9
2,990,288 - ABZR87_RS14155 0.34 +0.3
2,990,288 - ABZR87_RS14155 0.34 -0.5

Or see this region's nucleotide sequence