Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10245

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10240 and ABZR87_RS10245 are separated by 92 nucleotidesABZR87_RS10245 and ABZR87_RS10250 are separated by 67 nucleotidesABZR87_RS10250 and ABZR87_RS10255 are separated by 136 nucleotidesABZR87_RS10255 and ABZR87_RS10260 are separated by 53 nucleotides ABZR87_RS10240: ABZR87_RS10240 - elongation factor P maturation arginine rhamnosyltransferase EarP, at 2,170,715 to 2,171,908 _RS10240 ABZR87_RS10245: ABZR87_RS10245 - excinuclease ABC subunit UvrC, at 2,172,001 to 2,173,974 _RS10245 ABZR87_RS10250: ABZR87_RS10250 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 2,174,042 to 2,174,617 _RS10250 ABZR87_RS10255: ABZR87_RS10255 - tRNA-Gly, at 2,174,754 to 2,174,829 _RS10255 ABZR87_RS10260: ABZR87_RS10260 - tRNA-Gly, at 2,174,883 to 2,174,958 _RS10260 Position (kb) 2172 2173 2174Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2171.076 kb on + strand, within ABZR87_RS10240at 2171.077 kb on - strand, within ABZR87_RS10240at 2171.077 kb on - strand, within ABZR87_RS10240at 2171.077 kb on - strand, within ABZR87_RS10240at 2171.077 kb on - strand, within ABZR87_RS10240at 2171.077 kb on - strand, within ABZR87_RS10240at 2171.953 kb on + strandat 2171.953 kb on + strandat 2171.953 kb on + strandat 2171.954 kb on - strandat 2171.954 kb on - strandat 2171.954 kb on - strandat 2171.954 kb on - strandat 2171.970 kb on + strandat 2171.970 kb on + strandat 2171.971 kb on - strandat 2171.971 kb on - strandat 2172.130 kb on + strandat 2172.131 kb on - strandat 2172.136 kb on + strandat 2172.163 kb on + strandat 2172.163 kb on + strandat 2172.164 kb on - strandat 2172.164 kb on - strandat 2172.164 kb on - strandat 2172.164 kb on - strandat 2172.164 kb on - strandat 2172.206 kb on - strand, within ABZR87_RS10245at 2172.343 kb on + strand, within ABZR87_RS10245at 2172.343 kb on + strand, within ABZR87_RS10245at 2172.343 kb on + strand, within ABZR87_RS10245at 2172.344 kb on - strand, within ABZR87_RS10245at 2172.344 kb on - strand, within ABZR87_RS10245at 2172.344 kb on - strand, within ABZR87_RS10245at 2172.373 kb on + strand, within ABZR87_RS10245at 2172.379 kb on + strand, within ABZR87_RS10245at 2172.403 kb on + strand, within ABZR87_RS10245at 2172.403 kb on + strand, within ABZR87_RS10245at 2172.404 kb on - strand, within ABZR87_RS10245at 2172.419 kb on - strand, within ABZR87_RS10245at 2172.419 kb on - strand, within ABZR87_RS10245at 2172.419 kb on - strand, within ABZR87_RS10245at 2172.451 kb on + strand, within ABZR87_RS10245at 2172.452 kb on - strand, within ABZR87_RS10245at 2172.629 kb on - strand, within ABZR87_RS10245at 2172.716 kb on - strand, within ABZR87_RS10245at 2172.916 kb on + strand, within ABZR87_RS10245at 2172.916 kb on + strand, within ABZR87_RS10245at 2172.916 kb on + strand, within ABZR87_RS10245at 2172.916 kb on + strand, within ABZR87_RS10245at 2172.916 kb on + strand, within ABZR87_RS10245at 2172.916 kb on + strand, within ABZR87_RS10245at 2172.916 kb on + strand, within ABZR87_RS10245at 2172.917 kb on - strand, within ABZR87_RS10245at 2172.917 kb on - strand, within ABZR87_RS10245at 2172.917 kb on - strand, within ABZR87_RS10245at 2172.917 kb on - strand, within ABZR87_RS10245at 2173.055 kb on - strand, within ABZR87_RS10245at 2173.055 kb on - strand, within ABZR87_RS10245at 2173.055 kb on - strand, within ABZR87_RS10245at 2173.103 kb on + strand, within ABZR87_RS10245at 2173.266 kb on + strand, within ABZR87_RS10245at 2173.423 kb on + strand, within ABZR87_RS10245at 2173.423 kb on + strand, within ABZR87_RS10245at 2173.423 kb on + strand, within ABZR87_RS10245at 2173.423 kb on + strand, within ABZR87_RS10245at 2173.456 kb on + strand, within ABZR87_RS10245at 2173.457 kb on - strand, within ABZR87_RS10245at 2173.957 kb on + strandat 2173.957 kb on + strandat 2173.958 kb on - strandat 2174.002 kb on + strandat 2174.729 kb on + strandat 2174.761 kb on + strandat 2174.761 kb on + strandat 2174.761 kb on + strandat 2174.761 kb on + strandat 2174.761 kb on + strandat 2174.838 kb on + strandat 2174.838 kb on + strandat 2174.838 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,171,076 + ABZR87_RS10240 0.30 -2.8
2,171,077 - ABZR87_RS10240 0.30 -0.7
2,171,077 - ABZR87_RS10240 0.30 -0.1
2,171,077 - ABZR87_RS10240 0.30 -2.1
2,171,077 - ABZR87_RS10240 0.30 -2.7
2,171,077 - ABZR87_RS10240 0.30 -1.1
2,171,953 + -0.0
2,171,953 + +0.4
2,171,953 + -0.3
2,171,954 - +1.9
2,171,954 - -0.2
2,171,954 - +1.9
2,171,954 - -0.1
2,171,970 + -0.3
2,171,970 + -0.4
2,171,971 - +1.0
2,171,971 - +0.2
2,172,130 + +0.4
2,172,131 - +1.0
2,172,136 + +0.4
2,172,163 + -0.9
2,172,163 + +0.2
2,172,164 - +0.4
2,172,164 - +1.6
2,172,164 - -0.6
2,172,164 - +0.7
2,172,164 - +2.4
2,172,206 - ABZR87_RS10245 0.10 +0.5
2,172,343 + ABZR87_RS10245 0.17 -0.5
2,172,343 + ABZR87_RS10245 0.17 +1.5
2,172,343 + ABZR87_RS10245 0.17 +0.1
2,172,344 - ABZR87_RS10245 0.17 +0.4
2,172,344 - ABZR87_RS10245 0.17 +1.0
2,172,344 - ABZR87_RS10245 0.17 -0.1
2,172,373 + ABZR87_RS10245 0.19 -0.1
2,172,379 + ABZR87_RS10245 0.19 -0.3
2,172,403 + ABZR87_RS10245 0.20 -2.7
2,172,403 + ABZR87_RS10245 0.20 -2.1
2,172,404 - ABZR87_RS10245 0.20 +0.3
2,172,419 - ABZR87_RS10245 0.21 +0.5
2,172,419 - ABZR87_RS10245 0.21 +1.1
2,172,419 - ABZR87_RS10245 0.21 +0.9
2,172,451 + ABZR87_RS10245 0.23 -0.8
2,172,452 - ABZR87_RS10245 0.23 -0.3
2,172,629 - ABZR87_RS10245 0.32 -0.8
2,172,716 - ABZR87_RS10245 0.36 -1.3
2,172,916 + ABZR87_RS10245 0.46 -0.3
2,172,916 + ABZR87_RS10245 0.46 -0.5
2,172,916 + ABZR87_RS10245 0.46 +0.9
2,172,916 + ABZR87_RS10245 0.46 +0.7
2,172,916 + ABZR87_RS10245 0.46 +0.7
2,172,916 + ABZR87_RS10245 0.46 -0.5
2,172,916 + ABZR87_RS10245 0.46 -1.0
2,172,917 - ABZR87_RS10245 0.46 +0.1
2,172,917 - ABZR87_RS10245 0.46 +1.0
2,172,917 - ABZR87_RS10245 0.46 -0.7
2,172,917 - ABZR87_RS10245 0.46 +0.8
2,173,055 - ABZR87_RS10245 0.53 +1.5
2,173,055 - ABZR87_RS10245 0.53 -0.6
2,173,055 - ABZR87_RS10245 0.53 +0.7
2,173,103 + ABZR87_RS10245 0.56 +0.4
2,173,266 + ABZR87_RS10245 0.64 +1.7
2,173,423 + ABZR87_RS10245 0.72 +0.6
2,173,423 + ABZR87_RS10245 0.72 +0.8
2,173,423 + ABZR87_RS10245 0.72 +0.5
2,173,423 + ABZR87_RS10245 0.72 -0.1
2,173,456 + ABZR87_RS10245 0.74 -0.6
2,173,457 - ABZR87_RS10245 0.74 -0.3
2,173,957 + -0.8
2,173,957 + -0.6
2,173,958 - +0.9
2,174,002 + +0.4
2,174,729 + -2.1
2,174,761 + -0.3
2,174,761 + -1.5
2,174,761 + -1.0
2,174,761 + -0.6
2,174,761 + -1.0
2,174,838 + +0.3
2,174,838 + +0.2
2,174,838 + -0.8

Or see this region's nucleotide sequence