Experiment: Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004569 and ABIE53_004570 overlap by 94 nucleotides ABIE53_004570 and ABIE53_004571 are separated by 67 nucleotides ABIE53_004571 and ABIE53_004572 are separated by 199 nucleotides
ABIE53_004569: ABIE53_004569 - GNAT superfamily N-acetyltransferase, at 756,686 to 757,387
_004569
ABIE53_004570: ABIE53_004570 - flavin reductase (DIM6/NTAB) family NADH-FMN oxidoreductase RutF, at 757,294 to 757,893
_004570
ABIE53_004571: ABIE53_004571 - hypothetical protein, at 757,961 to 758,362
_004571
ABIE53_004572: ABIE53_004572 - GntR family transcriptional regulator/MocR family aminotransferase, at 758,562 to 760,076
_004572
Position (kb) 757
758
759 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 757.061 kb on + strand, within ABIE53_004569 at 757.061 kb on + strand, within ABIE53_004569 at 757.061 kb on + strand, within ABIE53_004569 at 757.062 kb on - strand, within ABIE53_004569 at 757.062 kb on - strand, within ABIE53_004569 at 757.062 kb on - strand, within ABIE53_004569 at 757.073 kb on + strand, within ABIE53_004569 at 757.074 kb on - strand, within ABIE53_004569 at 757.074 kb on - strand, within ABIE53_004569 at 757.074 kb on - strand, within ABIE53_004569 at 757.103 kb on + strand, within ABIE53_004569 at 757.103 kb on + strand, within ABIE53_004569 at 757.104 kb on - strand, within ABIE53_004569 at 757.104 kb on - strand, within ABIE53_004569 at 757.104 kb on - strand, within ABIE53_004569 at 757.104 kb on - strand, within ABIE53_004569 at 757.104 kb on - strand, within ABIE53_004569 at 757.118 kb on + strand, within ABIE53_004569 at 757.118 kb on + strand, within ABIE53_004569 at 757.118 kb on + strand, within ABIE53_004569 at 757.118 kb on + strand, within ABIE53_004569 at 757.118 kb on + strand, within ABIE53_004569 at 757.118 kb on + strand, within ABIE53_004569 at 757.118 kb on + strand, within ABIE53_004569 at 757.118 kb on + strand, within ABIE53_004569 at 757.119 kb on - strand, within ABIE53_004569 at 757.119 kb on - strand, within ABIE53_004569 at 757.119 kb on - strand, within ABIE53_004569 at 757.119 kb on - strand, within ABIE53_004569 at 757.119 kb on - strand, within ABIE53_004569 at 757.119 kb on - strand, within ABIE53_004569 at 757.119 kb on - strand, within ABIE53_004569 at 757.119 kb on - strand, within ABIE53_004569 at 757.253 kb on + strand, within ABIE53_004569 at 757.253 kb on + strand, within ABIE53_004569 at 757.254 kb on - strand, within ABIE53_004569 at 757.254 kb on - strand, within ABIE53_004569 at 757.385 kb on + strand at 757.385 kb on + strand at 757.385 kb on + strand at 757.385 kb on + strand at 757.385 kb on + strand at 757.385 kb on + strand at 757.385 kb on + strand at 757.385 kb on + strand at 757.386 kb on - strand at 757.386 kb on - strand at 757.386 kb on - strand at 757.386 kb on - strand at 757.386 kb on - strand at 757.386 kb on - strand at 757.386 kb on - strand at 757.386 kb on - strand at 757.386 kb on - strand at 757.386 kb on - strand at 757.440 kb on - strand, within ABIE53_004570 at 757.440 kb on - strand, within ABIE53_004570 at 757.440 kb on - strand, within ABIE53_004570 at 757.846 kb on + strand at 757.847 kb on - strand at 757.847 kb on - strand at 757.884 kb on + strand at 757.893 kb on + strand at 757.893 kb on + strand at 757.893 kb on + strand at 757.893 kb on + strand at 757.893 kb on + strand at 757.893 kb on + strand at 757.893 kb on + strand at 757.893 kb on + strand at 757.894 kb on - strand at 757.894 kb on - strand at 757.894 kb on - strand at 757.894 kb on - strand at 757.894 kb on - strand at 757.894 kb on - strand at 757.894 kb on - strand at 757.894 kb on - strand at 757.894 kb on - strand at 757.894 kb on - strand at 757.894 kb on - strand at 757.894 kb on - strand at 757.894 kb on - strand at 758.002 kb on + strand, within ABIE53_004571 at 758.002 kb on + strand, within ABIE53_004571 at 758.002 kb on + strand, within ABIE53_004571 at 758.003 kb on - strand, within ABIE53_004571 at 758.003 kb on - strand, within ABIE53_004571 at 758.003 kb on - strand, within ABIE53_004571 at 758.003 kb on - strand, within ABIE53_004571 at 758.296 kb on - strand, within ABIE53_004571 at 758.379 kb on + strand at 758.390 kb on - strand at 758.390 kb on - strand at 758.514 kb on + strand at 758.514 kb on + strand at 758.514 kb on + strand at 758.514 kb on + strand at 758.526 kb on + strand at 758.563 kb on + strand at 758.564 kb on - strand at 758.844 kb on - strand, within ABIE53_004572 at 758.844 kb on - strand, within ABIE53_004572 at 758.844 kb on - strand, within ABIE53_004572 at 758.844 kb on - strand, within ABIE53_004572 at 758.878 kb on + strand, within ABIE53_004572 at 758.980 kb on + strand, within ABIE53_004572 at 758.980 kb on + strand, within ABIE53_004572 at 758.981 kb on - strand, within ABIE53_004572 at 758.981 kb on - strand, within ABIE53_004572 at 759.076 kb on + strand, within ABIE53_004572 at 759.076 kb on + strand, within ABIE53_004572 at 759.077 kb on - strand, within ABIE53_004572 at 759.151 kb on + strand, within ABIE53_004572 at 759.151 kb on + strand, within ABIE53_004572 at 759.151 kb on + strand, within ABIE53_004572 at 759.151 kb on + strand, within ABIE53_004572 at 759.151 kb on + strand, within ABIE53_004572 at 759.152 kb on - strand, within ABIE53_004572 at 759.152 kb on - strand, within ABIE53_004572 at 759.152 kb on - strand, within ABIE53_004572 at 759.262 kb on + strand, within ABIE53_004572 at 759.262 kb on + strand, within ABIE53_004572 at 759.262 kb on + strand, within ABIE53_004572 at 759.262 kb on + strand, within ABIE53_004572 at 759.263 kb on - strand, within ABIE53_004572 at 759.263 kb on - strand, within ABIE53_004572 at 759.263 kb on - strand, within ABIE53_004572 at 759.263 kb on - strand, within ABIE53_004572 at 759.263 kb on - strand, within ABIE53_004572 at 759.267 kb on - strand, within ABIE53_004572
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut remove 757,061 + ABIE53_004569 0.53 -2.6 757,061 + ABIE53_004569 0.53 +0.1 757,061 + ABIE53_004569 0.53 +1.7 757,062 - ABIE53_004569 0.54 +3.3 757,062 - ABIE53_004569 0.54 +0.3 757,062 - ABIE53_004569 0.54 -0.7 757,073 + ABIE53_004569 0.55 -1.6 757,074 - ABIE53_004569 0.55 +4.0 757,074 - ABIE53_004569 0.55 -0.3 757,074 - ABIE53_004569 0.55 -2.1 757,103 + ABIE53_004569 0.59 -0.2 757,103 + ABIE53_004569 0.59 +0.1 757,104 - ABIE53_004569 0.60 -1.9 757,104 - ABIE53_004569 0.60 -2.2 757,104 - ABIE53_004569 0.60 -0.7 757,104 - ABIE53_004569 0.60 -1.6 757,104 - ABIE53_004569 0.60 -1.3 757,118 + ABIE53_004569 0.62 -0.3 757,118 + ABIE53_004569 0.62 -1.3 757,118 + ABIE53_004569 0.62 -0.9 757,118 + ABIE53_004569 0.62 -0.7 757,118 + ABIE53_004569 0.62 +0.4 757,118 + ABIE53_004569 0.62 +2.0 757,118 + ABIE53_004569 0.62 +0.5 757,118 + ABIE53_004569 0.62 -1.3 757,119 - ABIE53_004569 0.62 -0.6 757,119 - ABIE53_004569 0.62 +0.7 757,119 - ABIE53_004569 0.62 -0.6 757,119 - ABIE53_004569 0.62 -0.5 757,119 - ABIE53_004569 0.62 +2.3 757,119 - ABIE53_004569 0.62 +0.7 757,119 - ABIE53_004569 0.62 -1.0 757,119 - ABIE53_004569 0.62 -0.8 757,253 + ABIE53_004569 0.81 +0.7 757,253 + ABIE53_004569 0.81 -1.3 757,254 - ABIE53_004569 0.81 +0.7 757,254 - ABIE53_004569 0.81 +0.9 757,385 + -2.3 757,385 + -1.8 757,385 + +1.3 757,385 + +0.1 757,385 + -1.2 757,385 + -0.1 757,385 + +0.2 757,385 + +0.5 757,386 - -0.2 757,386 - -0.4 757,386 - +2.3 757,386 - +1.1 757,386 - -1.3 757,386 - -0.9 757,386 - -0.4 757,386 - -0.9 757,386 - -1.9 757,386 - +0.5 757,440 - ABIE53_004570 0.24 +0.7 757,440 - ABIE53_004570 0.24 -0.0 757,440 - ABIE53_004570 0.24 +0.7 757,846 + -0.3 757,847 - -2.6 757,847 - -0.5 757,884 + +0.7 757,893 + -0.3 757,893 + -0.9 757,893 + -0.9 757,893 + +0.4 757,893 + -0.9 757,893 + -1.2 757,893 + +0.5 757,893 + +0.4 757,894 - +1.3 757,894 - +1.3 757,894 - -0.0 757,894 - -0.9 757,894 - -0.9 757,894 - -2.5 757,894 - +0.7 757,894 - +0.7 757,894 - +3.3 757,894 - -0.3 757,894 - +1.9 757,894 - -1.3 757,894 - -0.4 758,002 + ABIE53_004571 0.10 -0.6 758,002 + ABIE53_004571 0.10 -0.0 758,002 + ABIE53_004571 0.10 +0.3 758,003 - ABIE53_004571 0.10 +2.3 758,003 - ABIE53_004571 0.10 -0.1 758,003 - ABIE53_004571 0.10 -0.6 758,003 - ABIE53_004571 0.10 +1.3 758,296 - ABIE53_004571 0.83 -0.1 758,379 + -0.9 758,390 - +1.8 758,390 - +1.3 758,514 + -1.9 758,514 + -1.9 758,514 + +2.1 758,514 + +2.7 758,526 + -2.6 758,563 + -0.3 758,564 - -2.5 758,844 - ABIE53_004572 0.19 -0.8 758,844 - ABIE53_004572 0.19 +0.7 758,844 - ABIE53_004572 0.19 -2.3 758,844 - ABIE53_004572 0.19 -0.3 758,878 + ABIE53_004572 0.21 +2.5 758,980 + ABIE53_004572 0.28 +0.4 758,980 + ABIE53_004572 0.28 +0.5 758,981 - ABIE53_004572 0.28 +0.0 758,981 - ABIE53_004572 0.28 -1.8 759,076 + ABIE53_004572 0.34 +0.7 759,076 + ABIE53_004572 0.34 +2.3 759,077 - ABIE53_004572 0.34 +0.5 759,151 + ABIE53_004572 0.39 +2.3 759,151 + ABIE53_004572 0.39 -1.6 759,151 + ABIE53_004572 0.39 +0.4 759,151 + ABIE53_004572 0.39 -0.5 759,151 + ABIE53_004572 0.39 +0.7 759,152 - ABIE53_004572 0.39 -0.5 759,152 - ABIE53_004572 0.39 +2.0 759,152 - ABIE53_004572 0.39 -0.6 759,262 + ABIE53_004572 0.46 -1.6 759,262 + ABIE53_004572 0.46 -1.2 759,262 + ABIE53_004572 0.46 +0.4 759,262 + ABIE53_004572 0.46 -1.6 759,263 - ABIE53_004572 0.46 -0.6 759,263 - ABIE53_004572 0.46 -0.9 759,263 - ABIE53_004572 0.46 +0.7 759,263 - ABIE53_004572 0.46 -0.2 759,263 - ABIE53_004572 0.46 +1.1 759,267 - ABIE53_004572 0.47 +1.0
Or see this region's nucleotide sequence