Experiment: Varel_Bryant_medium_Glucose with Geneticin G418 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0690 and BT0691 are separated by 68 nucleotides BT0691 and BT0692 overlap by 20 nucleotides BT0692 and BT0693 are separated by 224 nucleotides
BT0690: BT0690 - two-component system response regulator (NCBI ptt file), at 858,200 to 859,543
BT0690
BT0691: BT0691 - hypothetical protein (NCBI ptt file), at 859,612 to 860,415
BT0691
BT0692: BT0692 - putative calcineurin superfamily phosphohydrolase (NCBI ptt file), at 860,396 to 861,199
BT0692
BT0693: BT0693 - hypothetical protein (NCBI ptt file), at 861,424 to 863,805
BT0693
Position (kb) 860
861
862 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 859.413 kb on - strand at 859.413 kb on - strand at 859.505 kb on - strand at 859.514 kb on + strand at 859.537 kb on + strand at 859.589 kb on + strand at 859.670 kb on + strand at 859.697 kb on + strand, within BT0691 at 859.710 kb on + strand, within BT0691 at 859.715 kb on - strand, within BT0691 at 859.758 kb on + strand, within BT0691 at 859.773 kb on - strand, within BT0691 at 859.830 kb on - strand, within BT0691 at 859.880 kb on - strand, within BT0691 at 859.954 kb on - strand, within BT0691 at 859.956 kb on - strand, within BT0691 at 860.089 kb on - strand, within BT0691 at 860.100 kb on - strand, within BT0691 at 860.104 kb on + strand, within BT0691 at 860.156 kb on - strand, within BT0691 at 860.199 kb on - strand, within BT0691 at 860.224 kb on + strand, within BT0691 at 860.250 kb on - strand, within BT0691 at 860.303 kb on + strand, within BT0691 at 860.367 kb on + strand at 860.368 kb on - strand at 860.374 kb on + strand at 860.374 kb on + strand at 860.599 kb on + strand, within BT0692 at 860.860 kb on - strand, within BT0692 at 860.982 kb on - strand, within BT0692 at 860.983 kb on - strand, within BT0692 at 861.132 kb on + strand at 861.133 kb on - strand at 861.406 kb on - strand at 861.411 kb on + strand at 861.487 kb on + strand at 861.490 kb on - strand at 861.541 kb on - strand at 861.642 kb on + strand at 861.660 kb on - strand at 862.036 kb on + strand, within BT0693
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Geneticin G418 0.2 mM remove 859,413 - -0.9 859,413 - -1.5 859,505 - -0.6 859,514 + +1.1 859,537 + -0.8 859,589 + +0.1 859,670 + -1.8 859,697 + BT0691 0.11 -0.6 859,710 + BT0691 0.12 -2.3 859,715 - BT0691 0.13 -0.3 859,758 + BT0691 0.18 -1.7 859,773 - BT0691 0.20 -1.3 859,830 - BT0691 0.27 -1.7 859,880 - BT0691 0.33 +0.1 859,954 - BT0691 0.43 -0.1 859,956 - BT0691 0.43 +0.7 860,089 - BT0691 0.59 +0.1 860,100 - BT0691 0.61 -0.9 860,104 + BT0691 0.61 -1.3 860,156 - BT0691 0.68 -0.5 860,199 - BT0691 0.73 +0.5 860,224 + BT0691 0.76 +0.7 860,250 - BT0691 0.79 -0.5 860,303 + BT0691 0.86 +0.4 860,367 + +0.1 860,368 - -2.3 860,374 + -3.3 860,374 + -1.3 860,599 + BT0692 0.25 -2.3 860,860 - BT0692 0.58 -1.1 860,982 - BT0692 0.73 -3.1 860,983 - BT0692 0.73 -1.5 861,132 + +0.1 861,133 - -1.9 861,406 - -1.3 861,411 + -0.9 861,487 + +0.6 861,490 - -1.5 861,541 - +0.1 861,642 + -2.5 861,660 - -2.3 862,036 + BT0693 0.26 -0.9
Or see this region's nucleotide sequence