Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03045 and HSERO_RS03050 are separated by 71 nucleotides HSERO_RS03050 and HSERO_RS03055 are separated by 36 nucleotides HSERO_RS03055 and HSERO_RS03060 are separated by 95 nucleotides
HSERO_RS03045: HSERO_RS03045 - HrcA family transcriptional regulator, at 665,396 to 666,424
_RS03045
HSERO_RS03050: HSERO_RS03050 - hydrolase, at 666,496 to 667,230
_RS03050
HSERO_RS03055: HSERO_RS03055 - inorganic polyphosphate/ATP-NAD kinase, at 667,267 to 668,184
_RS03055
HSERO_RS03060: HSERO_RS03060 - DNA repair protein, at 668,280 to 669,926
_RS03060
Position (kb) 667
668
669 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 666.387 kb on + strand at 666.387 kb on + strand at 666.388 kb on - strand at 666.395 kb on - strand at 666.397 kb on - strand at 666.560 kb on + strand at 666.608 kb on + strand, within HSERO_RS03050 at 666.736 kb on - strand, within HSERO_RS03050 at 666.817 kb on - strand, within HSERO_RS03050 at 666.887 kb on - strand, within HSERO_RS03050 at 666.904 kb on + strand, within HSERO_RS03050 at 666.907 kb on - strand, within HSERO_RS03050 at 666.907 kb on - strand, within HSERO_RS03050 at 666.912 kb on - strand, within HSERO_RS03050 at 667.024 kb on - strand, within HSERO_RS03050 at 667.028 kb on + strand, within HSERO_RS03050 at 667.107 kb on - strand, within HSERO_RS03050 at 667.149 kb on + strand, within HSERO_RS03050 at 667.209 kb on + strand at 667.217 kb on - strand at 667.265 kb on + strand at 668.393 kb on + strand at 668.492 kb on + strand, within HSERO_RS03060 at 668.595 kb on + strand, within HSERO_RS03060 at 668.945 kb on + strand, within HSERO_RS03060 at 669.059 kb on + strand, within HSERO_RS03060 at 669.172 kb on + strand, within HSERO_RS03060
Per-strain Table
Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI remove 666,387 + +0.3 666,387 + -0.3 666,388 - +0.2 666,395 - +1.4 666,397 - +0.1 666,560 + +0.4 666,608 + HSERO_RS03050 0.15 -0.1 666,736 - HSERO_RS03050 0.33 -0.2 666,817 - HSERO_RS03050 0.44 -0.7 666,887 - HSERO_RS03050 0.53 +0.3 666,904 + HSERO_RS03050 0.56 +0.9 666,907 - HSERO_RS03050 0.56 -1.0 666,907 - HSERO_RS03050 0.56 -0.5 666,912 - HSERO_RS03050 0.57 +0.5 667,024 - HSERO_RS03050 0.72 -0.4 667,028 + HSERO_RS03050 0.72 +0.6 667,107 - HSERO_RS03050 0.83 -0.5 667,149 + HSERO_RS03050 0.89 +0.5 667,209 + +1.3 667,217 - -0.8 667,265 + +1.0 668,393 + +0.2 668,492 + HSERO_RS03060 0.13 -2.9 668,595 + HSERO_RS03060 0.19 -1.3 668,945 + HSERO_RS03060 0.40 -1.9 669,059 + HSERO_RS03060 0.47 -0.9 669,172 + HSERO_RS03060 0.54 -0.7
Or see this region's nucleotide sequence