Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02510 and HSERO_RS02515 are separated by 332 nucleotides HSERO_RS02515 and HSERO_RS02520 are separated by 54 nucleotides
HSERO_RS02510: HSERO_RS02510 - transketolase, at 551,285 to 553,279
_RS02510
HSERO_RS02515: HSERO_RS02515 - enzyme with a TIM-barrel fold protein, at 553,612 to 554,424
_RS02515
HSERO_RS02520: HSERO_RS02520 - transcriptional regulator, at 554,479 to 555,774
_RS02520
Position (kb) 553
554
555 Strain fitness (log2 ratio) -2
-1
0
1 at 552.732 kb on + strand, within HSERO_RS02510 at 552.802 kb on + strand, within HSERO_RS02510 at 552.879 kb on + strand, within HSERO_RS02510 at 553.015 kb on + strand, within HSERO_RS02510 at 553.030 kb on + strand, within HSERO_RS02510 at 553.038 kb on - strand, within HSERO_RS02510 at 553.074 kb on - strand, within HSERO_RS02510 at 553.085 kb on + strand at 553.156 kb on + strand at 553.337 kb on + strand at 553.345 kb on - strand at 553.495 kb on + strand at 553.822 kb on + strand, within HSERO_RS02515 at 554.078 kb on - strand, within HSERO_RS02515 at 554.147 kb on + strand, within HSERO_RS02515 at 554.148 kb on - strand, within HSERO_RS02515 at 554.211 kb on + strand, within HSERO_RS02515 at 554.616 kb on - strand, within HSERO_RS02520 at 554.675 kb on - strand, within HSERO_RS02520 at 554.728 kb on - strand, within HSERO_RS02520 at 554.772 kb on + strand, within HSERO_RS02520 at 554.799 kb on - strand, within HSERO_RS02520 at 554.799 kb on - strand, within HSERO_RS02520 at 554.799 kb on - strand, within HSERO_RS02520 at 554.856 kb on - strand, within HSERO_RS02520 at 554.958 kb on + strand, within HSERO_RS02520 at 555.140 kb on + strand, within HSERO_RS02520 at 555.356 kb on + strand, within HSERO_RS02520 at 555.361 kb on + strand, within HSERO_RS02520 at 555.369 kb on - strand, within HSERO_RS02520 at 555.396 kb on + strand, within HSERO_RS02520 at 555.404 kb on - strand, within HSERO_RS02520 at 555.404 kb on - strand, within HSERO_RS02520
Per-strain Table
Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI remove 552,732 + HSERO_RS02510 0.73 +0.9 552,802 + HSERO_RS02510 0.76 -0.1 552,879 + HSERO_RS02510 0.80 +0.3 553,015 + HSERO_RS02510 0.87 +0.4 553,030 + HSERO_RS02510 0.87 -1.3 553,038 - HSERO_RS02510 0.88 +0.5 553,074 - HSERO_RS02510 0.90 +0.2 553,085 + +0.3 553,156 + -0.2 553,337 + -0.1 553,345 - +0.1 553,495 + -0.2 553,822 + HSERO_RS02515 0.26 -0.1 554,078 - HSERO_RS02515 0.57 -0.3 554,147 + HSERO_RS02515 0.66 +0.5 554,148 - HSERO_RS02515 0.66 +0.2 554,211 + HSERO_RS02515 0.74 -0.5 554,616 - HSERO_RS02520 0.11 -1.8 554,675 - HSERO_RS02520 0.15 -1.9 554,728 - HSERO_RS02520 0.19 +0.3 554,772 + HSERO_RS02520 0.23 -0.5 554,799 - HSERO_RS02520 0.25 +1.1 554,799 - HSERO_RS02520 0.25 -1.0 554,799 - HSERO_RS02520 0.25 -0.1 554,856 - HSERO_RS02520 0.29 +1.6 554,958 + HSERO_RS02520 0.37 -1.0 555,140 + HSERO_RS02520 0.51 -2.5 555,356 + HSERO_RS02520 0.68 +0.2 555,361 + HSERO_RS02520 0.68 -0.7 555,369 - HSERO_RS02520 0.69 -0.4 555,396 + HSERO_RS02520 0.71 +1.4 555,404 - HSERO_RS02520 0.71 +0.3 555,404 - HSERO_RS02520 0.71 +0.9
Or see this region's nucleotide sequence