Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02505 and HSERO_RS02510 are separated by 552 nucleotides HSERO_RS02510 and HSERO_RS02515 are separated by 332 nucleotides
HSERO_RS02505: HSERO_RS02505 - cold-shock protein, at 550,520 to 550,732
_RS02505
HSERO_RS02510: HSERO_RS02510 - transketolase, at 551,285 to 553,279
_RS02510
HSERO_RS02515: HSERO_RS02515 - enzyme with a TIM-barrel fold protein, at 553,612 to 554,424
_RS02515
Position (kb) 551
552
553
554 Strain fitness (log2 ratio) -2
-1
0
1
2 at 550.352 kb on + strand at 550.364 kb on + strand at 550.364 kb on + strand at 550.373 kb on - strand at 550.424 kb on + strand at 550.501 kb on - strand at 550.742 kb on + strand at 551.030 kb on - strand at 551.177 kb on + strand at 551.182 kb on + strand at 551.196 kb on - strand at 551.271 kb on + strand at 551.287 kb on + strand at 551.290 kb on - strand at 551.290 kb on - strand at 551.432 kb on + strand at 551.440 kb on - strand at 551.445 kb on - strand at 551.535 kb on - strand, within HSERO_RS02510 at 551.648 kb on + strand, within HSERO_RS02510 at 551.877 kb on - strand, within HSERO_RS02510 at 551.913 kb on - strand, within HSERO_RS02510 at 552.033 kb on + strand, within HSERO_RS02510 at 552.182 kb on - strand, within HSERO_RS02510 at 552.182 kb on - strand, within HSERO_RS02510 at 552.285 kb on + strand, within HSERO_RS02510 at 552.391 kb on + strand, within HSERO_RS02510 at 552.732 kb on + strand, within HSERO_RS02510 at 552.802 kb on + strand, within HSERO_RS02510 at 552.879 kb on + strand, within HSERO_RS02510 at 553.015 kb on + strand, within HSERO_RS02510 at 553.030 kb on + strand, within HSERO_RS02510 at 553.038 kb on - strand, within HSERO_RS02510 at 553.074 kb on - strand, within HSERO_RS02510 at 553.085 kb on + strand at 553.156 kb on + strand at 553.337 kb on + strand at 553.345 kb on - strand at 553.495 kb on + strand at 553.822 kb on + strand, within HSERO_RS02515 at 554.078 kb on - strand, within HSERO_RS02515 at 554.147 kb on + strand, within HSERO_RS02515 at 554.148 kb on - strand, within HSERO_RS02515 at 554.211 kb on + strand, within HSERO_RS02515
Per-strain Table
Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI remove 550,352 + -0.4 550,364 + -2.2 550,364 + +0.5 550,373 - +0.1 550,424 + +0.3 550,501 - +0.1 550,742 + +0.3 551,030 - -2.1 551,177 + +1.4 551,182 + +0.6 551,196 - +1.2 551,271 + +0.9 551,287 + -0.7 551,290 - +0.3 551,290 - +0.4 551,432 + -0.1 551,440 - +0.2 551,445 - +0.4 551,535 - HSERO_RS02510 0.13 +0.6 551,648 + HSERO_RS02510 0.18 -0.4 551,877 - HSERO_RS02510 0.30 +2.5 551,913 - HSERO_RS02510 0.31 +0.2 552,033 + HSERO_RS02510 0.37 -0.3 552,182 - HSERO_RS02510 0.45 -0.5 552,182 - HSERO_RS02510 0.45 -1.5 552,285 + HSERO_RS02510 0.50 -1.3 552,391 + HSERO_RS02510 0.55 +1.6 552,732 + HSERO_RS02510 0.73 +0.9 552,802 + HSERO_RS02510 0.76 -0.1 552,879 + HSERO_RS02510 0.80 +0.3 553,015 + HSERO_RS02510 0.87 +0.4 553,030 + HSERO_RS02510 0.87 -1.3 553,038 - HSERO_RS02510 0.88 +0.5 553,074 - HSERO_RS02510 0.90 +0.2 553,085 + +0.3 553,156 + -0.2 553,337 + -0.1 553,345 - +0.1 553,495 + -0.2 553,822 + HSERO_RS02515 0.26 -0.1 554,078 - HSERO_RS02515 0.57 -0.3 554,147 + HSERO_RS02515 0.66 +0.5 554,148 - HSERO_RS02515 0.66 +0.2 554,211 + HSERO_RS02515 0.74 -0.5
Or see this region's nucleotide sequence