Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02290 and HSERO_RS02295 are separated by 115 nucleotides HSERO_RS02295 and HSERO_RS02300 are separated by 17 nucleotides HSERO_RS02300 and HSERO_RS02305 overlap by 17 nucleotides
HSERO_RS02290: HSERO_RS02290 - isopenicillin N synthase, at 501,752 to 502,738
_RS02290
HSERO_RS02295: HSERO_RS02295 - Rieske (2Fe-2S) protein, at 502,854 to 503,885
_RS02295
HSERO_RS02300: HSERO_RS02300 - nitrate ABC transporter ATPase, at 503,903 to 504,760
_RS02300
HSERO_RS02305: HSERO_RS02305 - ABC transporter ATP-binding protein, at 504,744 to 505,547
_RS02305
Position (kb) 502
503
504 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 502.074 kb on - strand at 502.076 kb on + strand, within HSERO_RS02290 at 502.158 kb on - strand, within HSERO_RS02290 at 502.283 kb on + strand, within HSERO_RS02290 at 502.349 kb on - strand, within HSERO_RS02290 at 502.518 kb on + strand, within HSERO_RS02290 at 502.561 kb on + strand, within HSERO_RS02290 at 502.662 kb on + strand at 502.741 kb on - strand at 502.763 kb on - strand at 502.763 kb on - strand at 502.810 kb on - strand at 502.857 kb on - strand at 502.905 kb on - strand at 503.041 kb on - strand, within HSERO_RS02295 at 503.187 kb on + strand, within HSERO_RS02295 at 503.362 kb on + strand, within HSERO_RS02295 at 503.384 kb on - strand, within HSERO_RS02295 at 503.534 kb on - strand, within HSERO_RS02295 at 503.594 kb on - strand, within HSERO_RS02295 at 503.787 kb on + strand at 503.795 kb on - strand at 503.797 kb on + strand at 503.841 kb on - strand at 503.999 kb on + strand, within HSERO_RS02300 at 504.027 kb on + strand, within HSERO_RS02300 at 504.035 kb on - strand, within HSERO_RS02300 at 504.083 kb on + strand, within HSERO_RS02300 at 504.199 kb on - strand, within HSERO_RS02300 at 504.367 kb on - strand at 504.500 kb on - strand at 504.616 kb on - strand, within HSERO_RS02300 at 504.719 kb on - strand at 504.822 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI remove 502,074 - +3.4 502,076 + HSERO_RS02290 0.33 +0.6 502,158 - HSERO_RS02290 0.41 +0.2 502,283 + HSERO_RS02290 0.54 +0.2 502,349 - HSERO_RS02290 0.60 +0.6 502,518 + HSERO_RS02290 0.78 -1.1 502,561 + HSERO_RS02290 0.82 -0.3 502,662 + +1.3 502,741 - -0.9 502,763 - +1.3 502,763 - +0.5 502,810 - +0.0 502,857 - -0.4 502,905 - +0.1 503,041 - HSERO_RS02295 0.18 +0.1 503,187 + HSERO_RS02295 0.32 +0.7 503,362 + HSERO_RS02295 0.49 +0.6 503,384 - HSERO_RS02295 0.51 +0.3 503,534 - HSERO_RS02295 0.66 +1.4 503,594 - HSERO_RS02295 0.72 +0.1 503,787 + +2.8 503,795 - +0.7 503,797 + +0.2 503,841 - -0.4 503,999 + HSERO_RS02300 0.11 -1.4 504,027 + HSERO_RS02300 0.14 -0.6 504,035 - HSERO_RS02300 0.15 +0.6 504,083 + HSERO_RS02300 0.21 -2.1 504,199 - HSERO_RS02300 0.34 +0.2 504,367 - -1.0 504,500 - -0.1 504,616 - HSERO_RS02300 0.83 +0.1 504,719 - +1.0 504,822 - -2.1
Or see this region's nucleotide sequence