Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS00030

Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Taped volatile agar plate with Trichoderma atroviridae IMI
10,359	-		HSERO_RS00025	0.73	-0.1
10,385	+		HSERO_RS00025	0.74	-0.1
10,392	-		HSERO_RS00025	0.74	+1.5
10,399	+		HSERO_RS00025	0.74	+0.6
10,407	+		HSERO_RS00025	0.75	+1.0
10,438	+		HSERO_RS00025	0.76	+0.4
10,450	+		HSERO_RS00025	0.76	+0.4
10,455	+		HSERO_RS00025	0.76	+0.3
10,457	+		HSERO_RS00025	0.76	+0.2
10,457	+		HSERO_RS00025	0.76	-0.8
10,458	-		HSERO_RS00025	0.76	+0.1
10,460	+		HSERO_RS00025	0.76	+0.6
10,463	-		HSERO_RS00025	0.76	+1.0
10,465	-		HSERO_RS00025	0.76	-0.1
10,467	-		HSERO_RS00025	0.77	-0.2
10,467	-		HSERO_RS00025	0.77	-0.0
10,471	+		HSERO_RS00025	0.77	+0.1
10,484	-		HSERO_RS00025	0.77	+0.4
10,490	+		HSERO_RS00025	0.77	+0.0
10,490	+		HSERO_RS00025	0.77	-0.0
10,490	+		HSERO_RS00025	0.77	+0.3
10,490	+		HSERO_RS00025	0.77	+0.1
10,490	+		HSERO_RS00025	0.77	+0.6
10,490	+				-0.1
10,490	+		HSERO_RS00025	0.77	+0.1
10,490	+		HSERO_RS00025	0.77	-0.4
10,490	+		HSERO_RS00025	0.77	-0.0
10,497	+		HSERO_RS00025	0.78	+0.2
10,498	-		HSERO_RS00025	0.78	-0.1
10,498	-		HSERO_RS00025	0.78	-0.1
10,498	-		HSERO_RS00025	0.78	+0.2
10,498	-		HSERO_RS00025	0.78	+0.2
10,498	-		HSERO_RS00025	0.78	+0.0
10,498	-		HSERO_RS00025	0.78	-0.8
10,498	-		HSERO_RS00025	0.78	-0.8
10,498	-		HSERO_RS00025	0.78	-0.5
10,498	-		HSERO_RS00025	0.78	-0.1
10,498	-		HSERO_RS00025	0.78	-0.4
10,498	-		HSERO_RS00025	0.78	-0.6
10,502	+		HSERO_RS00025	0.78	+0.5
10,502	+		HSERO_RS00025	0.78	+1.3
10,502	+		HSERO_RS00025	0.78	+1.1
10,534	-		HSERO_RS00025	0.79	-0.0
10,550	+		HSERO_RS00025	0.79	-0.0
10,555	+		HSERO_RS00025	0.80	+0.6
10,558	-		HSERO_RS00025	0.80	-1.3
10,558	-		HSERO_RS00025	0.80	-0.7
10,583	+		HSERO_RS00025	0.80	-0.1
10,593	-		HSERO_RS00025	0.81	-0.1
10,614	+		HSERO_RS00025	0.81	+0.1
10,625	+		HSERO_RS00025	0.82	-0.5
10,628	+		HSERO_RS00025	0.82	+0.3
10,638	+		HSERO_RS00025	0.82	-0.4
10,638	+		HSERO_RS00025	0.82	+0.1
10,638	+		HSERO_RS00025	0.82	+0.1
10,646	-		HSERO_RS00025	0.83	-0.1
10,646	-		HSERO_RS00025	0.83	-0.3
10,649	+		HSERO_RS00025	0.83	+0.1
10,649	+		HSERO_RS00025	0.83	-0.8
10,649	+		HSERO_RS00025	0.83	+0.5
10,665	-		HSERO_RS00025	0.83	+0.4
10,680	-		HSERO_RS00025	0.84	+0.9
10,689	+		HSERO_RS00025	0.84	-0.8
10,757	+		HSERO_RS00025	0.86	-0.3
10,757	+		HSERO_RS00025	0.86	+0.2
10,757	+		HSERO_RS00025	0.86	+0.5
10,757	+		HSERO_RS00025	0.86	-0.0
10,765	-		HSERO_RS00025	0.87	-0.3
10,768	+		HSERO_RS00025	0.87	+0.9
10,774	+		HSERO_RS00025	0.87	-0.6
10,781	+		HSERO_RS00025	0.87	+0.2
10,781	+		HSERO_RS00025	0.87	+0.8
10,781	+		HSERO_RS00025	0.87	+0.1
10,782	-		HSERO_RS00025	0.87	+0.2
10,782	-		HSERO_RS00025	0.87	-0.2
10,782	-		HSERO_RS00025	0.87	-0.6
10,789	-		HSERO_RS00025	0.87	-0.2
10,794	-		HSERO_RS00025	0.87	-0.6
10,798	-		HSERO_RS00025	0.88	-0.8
10,811	+		HSERO_RS00025	0.88	-0.5
10,811	+		HSERO_RS00025	0.88	+0.8
10,811	+		HSERO_RS00025	0.88	-0.3
10,811	+		HSERO_RS00025	0.88	+0.5
10,811	+		HSERO_RS00025	0.88	+0.9
10,811	+		HSERO_RS00025	0.88	+0.7
10,816	+		HSERO_RS00025	0.88	-0.4
10,819	-		HSERO_RS00025	0.88	-0.6
10,819	-		HSERO_RS00025	0.88	-0.3
10,819	-		HSERO_RS00025	0.88	-0.6
10,821	+		HSERO_RS00025	0.88	-0.9
10,821	+		HSERO_RS00025	0.88	-0.3
10,821	+		HSERO_RS00025	0.88	+0.7
10,821	+		HSERO_RS00025	0.88	-0.1
10,824	-		HSERO_RS00025	0.88	+0.3
10,824	-		HSERO_RS00025	0.88	-0.1
10,824	-		HSERO_RS00025	0.88	+0.0
10,824	-		HSERO_RS00025	0.88	-1.2
10,824	-		HSERO_RS00025	0.88	-0.2
10,826	+		HSERO_RS00025	0.89	-0.2
10,826	+		HSERO_RS00025	0.89	-1.0
10,829	-		HSERO_RS00025	0.89	+1.0
10,829	-		HSERO_RS00025	0.89	+0.4
10,829	-		HSERO_RS00025	0.89	-0.3
10,829	-		HSERO_RS00025	0.89	+0.1
10,831	+		HSERO_RS00025	0.89	-1.6
10,831	+		HSERO_RS00025	0.89	+0.8
10,831	+		HSERO_RS00025	0.89	+1.0
10,831	+		HSERO_RS00025	0.89	-0.3
10,831	+		HSERO_RS00025	0.89	-0.6
10,831	+		HSERO_RS00025	0.89	-0.1
10,831	+				-1.8
10,831	+		HSERO_RS00025	0.89	-0.4
10,833	-		HSERO_RS00025	0.89	+0.3
10,836	+		HSERO_RS00025	0.89	+0.5
10,839	-		HSERO_RS00025	0.89	+0.4
10,839	-		HSERO_RS00025	0.89	+0.0
10,839	-		HSERO_RS00025	0.89	-1.6
10,839	-		HSERO_RS00025	0.89	+0.2
10,839	-		HSERO_RS00025	0.89	-1.6
10,839	-		HSERO_RS00025	0.89	-0.6
10,839	-		HSERO_RS00025	0.89	-0.0
10,839	-		HSERO_RS00025	0.89	+0.1
10,839	-		HSERO_RS00025	0.89	-0.7
10,839	-		HSERO_RS00025	0.89	-1.5
10,839	-				-1.4
10,839	-		HSERO_RS00025	0.89	+0.1
10,856	-		HSERO_RS00025	0.90	+0.2
10,858	-		HSERO_RS00025	0.90	-0.3
10,858	-		HSERO_RS00025	0.90	+0.4
10,867	+		HSERO_RS00025	0.90	-0.4
10,867	+		HSERO_RS00025	0.90	-0.4
10,869	+				+0.1
10,869	+				-0.3
10,869	+				-0.1
10,875	-				-0.0
10,877	+				-0.2
10,877	+				+1.2
10,877	+				-0.1
10,877	+				-2.5
10,877	+				-0.1
10,877	+				+0.2
10,877	+				+0.6
10,877	+				+0.2
10,877	+				-1.2
10,877	-				+0.6
10,877	-				-0.4
10,877	-				-0.7
10,877	-				-0.1
10,877	-				-2.0
10,877	-				-0.1
10,877	-				-0.6
10,883	+				+0.1
10,885	-				-1.1
10,885	-				+0.8
10,885	-				-0.9
10,885	-				+2.7
10,919	+				-0.3
10,919	+				-0.3
10,919	+				-1.2
10,919	+				-0.2
10,919	+				-1.5
10,920	-				+0.2
10,924	+				-0.4
10,927	-				-0.0
10,927	-				+0.4
10,927	-				+1.2
10,927	-				-0.2
10,951	+				+0.2
10,953	+				+0.8
10,959	-				+0.7
10,961	+				+0.4
10,961	-				-1.8
10,964	-				-1.2
10,967	+				+0.0
10,978	+				-0.8
10,983	-				-0.2
10,985	+				+0.1
10,986	-				+0.7
10,986	-				-0.1
10,990	-				-0.5
10,992	+				+0.4
10,994	+				-1.5
10,994	-				+0.2
10,999	+				+1.2
11,000	+				-0.3
11,000	+				-0.0
11,000	+				+0.5
11,000	+				-1.1
11,000	+				+0.5
11,004	+				+1.6
11,007	-				+0.5
11,008	-				+0.0
11,012	-				+0.2
11,014	-				+0.7
11,016	-				+0.4
11,018	+				-0.3
11,018	-				+0.3
11,020	+				-0.7
11,026	-				+1.9
11,030	-				-0.1
11,041	+				-1.6
11,041	+				+0.5
11,050	-				-0.1
11,057	+				-0.1
11,057	+				+0.2
11,057	+				-3.2
11,057	+				-1.1
11,057	+				+0.5
11,061	+				-1.6
11,061	+				+0.1
11,061	+				-0.1
11,061	+				+2.3
11,061	+				+0.7
11,061	+				-1.5
11,062	+				+0.1
11,065	-				-0.9
11,065	-				-0.0
11,065	-				+0.3
11,065	-				-2.1
11,069	-				-1.0
11,069	-				+0.5
11,069	-				+0.4
11,084	+				+2.0
11,084	+				+0.9
11,086	+				-2.5
11,088	+				+1.0
11,088	+				-0.5
11,088	-				+0.7
11,089	-				+0.3
11,089	-				+1.2
11,094	-				-0.4
11,096	+				-0.1
11,100	+				-0.6
11,100	+				+0.4
11,100	+				-0.5
11,100	+				-0.1
11,100	+				+0.2
11,100	+				-0.4
11,100	+				+0.3
11,100	+				-1.6
11,100	+				-0.4
11,100	+				-0.2
11,100	+				+0.4
11,100	+				+0.9
11,100	+				-0.0
11,100	+				+0.0
11,101	-				-0.0
11,101	-				+0.0
11,102	-				+0.6
11,105	+				-0.9
11,108	-				-0.2
11,108	-				+0.0
11,108	-				-0.0
11,108	-				-0.6
11,108	-				-1.4
11,108	-				-0.5
11,108	-				+1.7
11,108	-				+0.8
11,108	-				+0.5
11,108	-				-0.5
11,110	+				+0.8
11,110	+				-0.1
11,110	+				+0.5
11,110	+				-0.4
11,110	+				-0.1
11,113	-				+0.9
11,113	-				-0.8
11,113	-				+3.8
11,118	-				+2.0
11,131	-				+0.4
11,134	+				+0.1
11,134	+				+0.4
11,139	+				+0.0
11,139	+				+0.5
11,144	+				-0.4
11,147	-				-0.2
11,154	+				-0.1
11,154	+				+0.0
11,154	+				+0.3
11,154	+				-1.2
11,154	+				-0.4
11,154	+				-0.3
11,154	+				-0.8
11,154	+				-0.3
11,154	+				+0.6
11,154	+				-0.5
11,154	+				-2.6
11,154	+				-1.1
11,154	+				-1.5
11,154	+				+0.9
11,154	+				-0.4
11,154	+				-0.7
11,154	+				+0.2
11,154	+				+2.7
11,154	+				+1.2
11,154	+				+0.1
11,154	+				+0.5
11,154	+				+0.6
11,154	+				-0.7
11,154	+				+0.3
11,154	+				+0.5
11,156	+				-0.0
11,162	-				-2.1
11,162	-				-1.8
11,162	-				-1.1
11,162	-				+0.1
11,162	-				-0.5
11,162	-				+1.0
11,162	-				-2.4
11,162	-				-0.2
11,162	-				-1.0
11,162	-				+0.2
11,162	-				+0.2
11,162	-				-0.6
11,162	-				+0.5
11,162	-				-1.2
11,162	-				-0.2
11,162	-				-0.1
11,162	-				-0.8
11,162	-				-0.1
11,162	-				-1.0
11,162	-				-1.1
11,162	-				-0.8
11,162	-				-0.9
11,162	-				-0.5
11,164	-				-0.2
11,164	-				+1.5
11,171	-				+0.1
11,171	-				+2.8
11,176	+				+1.6
11,178	+				+0.8
11,178	+				-0.4
11,185	-				+0.2
11,191	-				+0.2
11,192	-				+3.4
11,258	+				-0.2
11,258	+				+0.5
11,258	+				-0.9
11,258	+				+0.1
11,258	+				+0.8
11,263	+				+0.4
11,263	+				-0.5
11,263	+				-0.5
11,263	+				+0.9
11,263	+				-0.3
11,263	+				-2.8
11,263	+				-0.3
11,263	+				-0.8
11,263	+				+0.2
11,263	+				+0.1
11,263	+				-0.6
11,263	+				-0.1
11,263	+				-1.6
11,263	+				+2.2
11,263	+				-0.7
11,263	+				-1.0
11,266	-				+0.1
11,266	-				-1.0
11,266	-				-0.2
11,266	-				+1.1
11,266	-				+1.2
11,266	-				+0.6
11,266	-				+0.5
11,266	-				+0.4
11,268	+				-0.2
11,271	-				+0.0
11,271	-				+1.0
11,271	-				+0.1
11,271	-				+0.6
11,271	-				+0.5
11,271	-				-0.4
11,271	-				-0.2
11,271	-				-0.3
11,271	-				+0.6
11,276	-				-2.1
11,276	-				+0.7
11,276	-				+0.4
11,276	-				-0.2
11,290	+				-0.8
11,290	+				-0.4
11,290	+				+0.6
11,293	+				-0.9
11,298	-				-1.4
11,298	-				+0.0
11,306	+				-0.0
11,309	-				-0.3
11,310	-				-2.2
11,314	-				-0.7
11,336	+				+2.0
11,336	+				-0.7
11,336	+				+0.4
11,336	+				-1.0
11,336	+				-0.6
11,336	+				-0.7
11,336	+				-0.2
11,336	+				-0.2
11,336	+				-0.8
11,336	+				-0.6
11,336	+				-1.0
11,336	+				-0.6
11,341	+				+0.3
11,341	+				-0.4
11,344	-				-0.1
11,344	-				-0.0
11,344	-				-1.1
11,344	-				+0.5
11,344	-				+0.0
11,344	-				-0.4
11,344	-				+0.1
11,344	-				+0.8
11,344	-				+0.4
11,344	-				-0.5
11,349	+				-0.5
11,349	-				-0.6
11,349	-				+0.7
11,349	-				+0.2
11,353	+				-0.8
11,354	+				-0.2
11,354	+				+0.4
11,357	-				-0.0
11,362	-				-0.8
11,368	+				+0.4
11,368	+				+0.2
11,368	+				+0.4
11,368	+				+0.6
11,368	+				-0.3
11,368	+				-0.0
11,371	-				+0.1
11,376	-				-0.0
11,376	-				-0.9
11,376	-				-0.8
11,378	+				+1.8
11,379	+				+0.3
11,385	+				-1.5
11,385	+				-0.7
11,385	+				-0.0
11,385	+				-0.6
11,385	+				-0.2
11,385	+				-0.7
11,385	+				-1.8
11,387	-				-0.7
11,387	-				-0.1
11,387	-				+0.7
11,393	-				-0.0
11,393	-				-0.3
11,393	-				-3.3
11,393	-				+0.7
11,395	-				+1.5
11,396	+				+0.2
11,404	+				-1.4
11,404	+				-0.0
11,404	-				+0.5
11,404	-				-0.6
11,412	-				-0.1
11,426	+				+0.8
11,427	-				-1.7
11,433	-				-0.7
11,447	+		HSERO_RS00030	0.10	+0.8
11,469	+		HSERO_RS00030	0.12	-0.4
11,517	+		HSERO_RS00030	0.17	-0.8
11,517	-		HSERO_RS00030	0.17	+0.1
11,518	-		HSERO_RS00030	0.17	+0.9
11,551	-		HSERO_RS00030	0.20	+2.0
11,557	-		HSERO_RS00030	0.21	+2.8
11,559	+		HSERO_RS00030	0.21	+0.2
11,561	-		HSERO_RS00030	0.21	-0.6
11,569	-		HSERO_RS00030	0.22	-1.4
11,569	-		HSERO_RS00030	0.22	+0.4
11,569	-		HSERO_RS00030	0.22	+0.7
11,569	-		HSERO_RS00030	0.22	-1.1
11,602	+		HSERO_RS00030	0.26	-0.4
11,602	+		HSERO_RS00030	0.26	+0.4
11,608	+		HSERO_RS00030	0.26	-0.4
11,610	+		HSERO_RS00030	0.26	-0.1
11,610	-		HSERO_RS00030	0.26	-0.7
11,611	-		HSERO_RS00030	0.26	+0.7
11,611	-		HSERO_RS00030	0.26	-0.7
11,618	+		HSERO_RS00030	0.27	-1.2
11,618	-		HSERO_RS00030	0.27	+0.0
11,625	-		HSERO_RS00030	0.28	-0.2
11,642	+		HSERO_RS00030	0.30	-0.4
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