Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17050

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17045 and ABZR87_RS17050 are separated by 87 nucleotidesABZR87_RS17050 and ABZR87_RS17055 are separated by 97 nucleotidesABZR87_RS17055 and ABZR87_RS17060 are separated by 33 nucleotides ABZR87_RS17045: ABZR87_RS17045 - LysR family transcriptional regulator, at 174,663 to 175,556 _RS17045 ABZR87_RS17050: ABZR87_RS17050 - NAD(P)H-dependent oxidoreductase, at 175,644 to 176,432 _RS17050 ABZR87_RS17055: ABZR87_RS17055 - sulfite exporter TauE/SafE family protein, at 176,530 to 177,312 _RS17055 ABZR87_RS17060: ABZR87_RS17060 - carboxymuconolactone decarboxylase family protein, at 177,346 to 177,747 _RS17060 Position (kb) 175 176 177Strain fitness (log2 ratio) -2 -1 0 1 2at 175.042 kb on + strand, within ABZR87_RS17045at 175.043 kb on - strand, within ABZR87_RS17045at 175.043 kb on - strand, within ABZR87_RS17045at 175.061 kb on + strand, within ABZR87_RS17045at 175.062 kb on - strand, within ABZR87_RS17045at 175.149 kb on - strand, within ABZR87_RS17045at 175.237 kb on + strand, within ABZR87_RS17045at 175.550 kb on + strandat 175.560 kb on + strandat 175.594 kb on - strandat 175.663 kb on - strandat 175.663 kb on - strandat 175.663 kb on - strandat 175.761 kb on + strand, within ABZR87_RS17050at 175.851 kb on + strand, within ABZR87_RS17050at 175.851 kb on + strand, within ABZR87_RS17050at 175.993 kb on - strand, within ABZR87_RS17050at 175.998 kb on + strand, within ABZR87_RS17050at 175.998 kb on + strand, within ABZR87_RS17050at 175.999 kb on - strand, within ABZR87_RS17050at 175.999 kb on - strand, within ABZR87_RS17050at 176.121 kb on + strand, within ABZR87_RS17050at 176.121 kb on + strand, within ABZR87_RS17050at 176.122 kb on - strand, within ABZR87_RS17050at 176.187 kb on + strand, within ABZR87_RS17050at 176.187 kb on + strand, within ABZR87_RS17050at 176.187 kb on + strand, within ABZR87_RS17050at 176.187 kb on + strand, within ABZR87_RS17050at 176.187 kb on + strand, within ABZR87_RS17050at 176.188 kb on - strand, within ABZR87_RS17050at 176.188 kb on - strand, within ABZR87_RS17050at 176.188 kb on - strand, within ABZR87_RS17050at 176.188 kb on - strand, within ABZR87_RS17050at 176.191 kb on - strand, within ABZR87_RS17050at 176.191 kb on - strand, within ABZR87_RS17050at 176.191 kb on - strand, within ABZR87_RS17050at 176.227 kb on - strand, within ABZR87_RS17050at 176.346 kb on + strand, within ABZR87_RS17050at 176.346 kb on + strand, within ABZR87_RS17050at 176.431 kb on - strandat 176.443 kb on + strandat 176.476 kb on + strandat 176.483 kb on + strandat 176.483 kb on + strandat 176.484 kb on - strandat 176.484 kb on - strandat 176.484 kb on - strandat 176.654 kb on - strand, within ABZR87_RS17055at 176.731 kb on + strand, within ABZR87_RS17055at 176.800 kb on + strand, within ABZR87_RS17055at 176.801 kb on - strand, within ABZR87_RS17055at 176.801 kb on - strand, within ABZR87_RS17055at 176.801 kb on - strand, within ABZR87_RS17055at 176.847 kb on + strand, within ABZR87_RS17055at 176.848 kb on - strand, within ABZR87_RS17055at 176.884 kb on + strand, within ABZR87_RS17055at 176.884 kb on + strand, within ABZR87_RS17055at 176.884 kb on + strand, within ABZR87_RS17055at 176.885 kb on - strand, within ABZR87_RS17055at 177.061 kb on - strand, within ABZR87_RS17055at 177.061 kb on - strand, within ABZR87_RS17055at 177.133 kb on + strand, within ABZR87_RS17055at 177.133 kb on + strand, within ABZR87_RS17055at 177.133 kb on + strand, within ABZR87_RS17055at 177.133 kb on + strand, within ABZR87_RS17055at 177.133 kb on + strand, within ABZR87_RS17055at 177.134 kb on - strand, within ABZR87_RS17055at 177.134 kb on - strand, within ABZR87_RS17055at 177.134 kb on - strand, within ABZR87_RS17055at 177.134 kb on - strand, within ABZR87_RS17055at 177.134 kb on - strand, within ABZR87_RS17055

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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175,042 + ABZR87_RS17045 0.42 -0.2
175,043 - ABZR87_RS17045 0.43 -0.1
175,043 - ABZR87_RS17045 0.43 +0.2
175,061 + ABZR87_RS17045 0.45 +0.2
175,062 - ABZR87_RS17045 0.45 -0.2
175,149 - ABZR87_RS17045 0.54 -0.0
175,237 + ABZR87_RS17045 0.64 -0.2
175,550 + +2.2
175,560 + +0.3
175,594 - +0.7
175,663 - +1.8
175,663 - +0.3
175,663 - -0.4
175,761 + ABZR87_RS17050 0.15 +0.0
175,851 + ABZR87_RS17050 0.26 +1.2
175,851 + ABZR87_RS17050 0.26 +0.2
175,993 - ABZR87_RS17050 0.44 -0.0
175,998 + ABZR87_RS17050 0.45 +0.8
175,998 + ABZR87_RS17050 0.45 +1.2
175,999 - ABZR87_RS17050 0.45 +1.4
175,999 - ABZR87_RS17050 0.45 +0.1
176,121 + ABZR87_RS17050 0.60 -1.1
176,121 + ABZR87_RS17050 0.60 +1.1
176,122 - ABZR87_RS17050 0.61 -0.6
176,187 + ABZR87_RS17050 0.69 +0.5
176,187 + ABZR87_RS17050 0.69 +0.4
176,187 + ABZR87_RS17050 0.69 +0.9
176,187 + ABZR87_RS17050 0.69 +0.5
176,187 + ABZR87_RS17050 0.69 +0.7
176,188 - ABZR87_RS17050 0.69 -2.0
176,188 - ABZR87_RS17050 0.69 -0.8
176,188 - ABZR87_RS17050 0.69 +0.3
176,188 - ABZR87_RS17050 0.69 +0.1
176,191 - ABZR87_RS17050 0.69 -0.2
176,191 - ABZR87_RS17050 0.69 +0.0
176,191 - ABZR87_RS17050 0.69 -0.3
176,227 - ABZR87_RS17050 0.74 -0.3
176,346 + ABZR87_RS17050 0.89 +0.3
176,346 + ABZR87_RS17050 0.89 -0.8
176,431 - +0.9
176,443 + -0.2
176,476 + -0.4
176,483 + -0.0
176,483 + -0.2
176,484 - -0.4
176,484 - +2.2
176,484 - -1.3
176,654 - ABZR87_RS17055 0.16 +0.6
176,731 + ABZR87_RS17055 0.26 +0.5
176,800 + ABZR87_RS17055 0.34 -0.3
176,801 - ABZR87_RS17055 0.35 +0.6
176,801 - ABZR87_RS17055 0.35 -0.4
176,801 - ABZR87_RS17055 0.35 -0.7
176,847 + ABZR87_RS17055 0.40 -0.0
176,848 - ABZR87_RS17055 0.41 +0.6
176,884 + ABZR87_RS17055 0.45 -0.7
176,884 + ABZR87_RS17055 0.45 -0.7
176,884 + ABZR87_RS17055 0.45 -1.7
176,885 - ABZR87_RS17055 0.45 -0.2
177,061 - ABZR87_RS17055 0.68 +0.3
177,061 - ABZR87_RS17055 0.68 +0.1
177,133 + ABZR87_RS17055 0.77 -0.3
177,133 + ABZR87_RS17055 0.77 +0.7
177,133 + ABZR87_RS17055 0.77 -0.1
177,133 + ABZR87_RS17055 0.77 +0.1
177,133 + ABZR87_RS17055 0.77 +1.8
177,134 - ABZR87_RS17055 0.77 +0.1
177,134 - ABZR87_RS17055 0.77 -0.4
177,134 - ABZR87_RS17055 0.77 -1.1
177,134 - ABZR87_RS17055 0.77 -0.5
177,134 - ABZR87_RS17055 0.77 +0.5

Or see this region's nucleotide sequence