Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10035

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10025 and ABZR87_RS10030 are separated by 24 nucleotidesABZR87_RS10030 and ABZR87_RS10035 are separated by 25 nucleotidesABZR87_RS10035 and ABZR87_RS10040 are separated by 181 nucleotides ABZR87_RS10025: ABZR87_RS10025 - lysine--tRNA ligase, at 2,128,260 to 2,129,804 _RS10025 ABZR87_RS10030: ABZR87_RS10030 - SDR family oxidoreductase, at 2,129,829 to 2,130,569 _RS10030 ABZR87_RS10035: ABZR87_RS10035 - peptide chain release factor 2, at 2,130,595 to 2,131,699 _RS10035 ABZR87_RS10040: ABZR87_RS10040 - nicotinate phosphoribosyltransferase, at 2,131,881 to 2,133,050 _RS10040 Position (kb) 2130 2131 2132Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2129.888 kb on - strandat 2130.107 kb on - strand, within ABZR87_RS10030at 2130.107 kb on - strand, within ABZR87_RS10030at 2131.762 kb on - strandat 2131.914 kb on + strandat 2131.915 kb on - strandat 2131.915 kb on - strandat 2132.082 kb on + strand, within ABZR87_RS10040at 2132.082 kb on + strand, within ABZR87_RS10040at 2132.083 kb on - strand, within ABZR87_RS10040at 2132.155 kb on - strand, within ABZR87_RS10040at 2132.155 kb on - strand, within ABZR87_RS10040at 2132.155 kb on - strand, within ABZR87_RS10040at 2132.460 kb on + strand, within ABZR87_RS10040at 2132.461 kb on - strand, within ABZR87_RS10040at 2132.532 kb on + strand, within ABZR87_RS10040at 2132.532 kb on + strand, within ABZR87_RS10040at 2132.533 kb on - strand, within ABZR87_RS10040at 2132.533 kb on - strand, within ABZR87_RS10040at 2132.533 kb on - strand, within ABZR87_RS10040at 2132.611 kb on - strand, within ABZR87_RS10040at 2132.611 kb on - strand, within ABZR87_RS10040at 2132.642 kb on + strand, within ABZR87_RS10040at 2132.643 kb on - strand, within ABZR87_RS10040at 2132.646 kb on + strand, within ABZR87_RS10040at 2132.646 kb on + strand, within ABZR87_RS10040at 2132.646 kb on + strand, within ABZR87_RS10040at 2132.647 kb on - strand, within ABZR87_RS10040

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,129,888 - -0.1
2,130,107 - ABZR87_RS10030 0.38 -0.1
2,130,107 - ABZR87_RS10030 0.38 -0.9
2,131,762 - +0.1
2,131,914 + +0.9
2,131,915 - +0.4
2,131,915 - -0.9
2,132,082 + ABZR87_RS10040 0.17 -0.2
2,132,082 + ABZR87_RS10040 0.17 +0.1
2,132,083 - ABZR87_RS10040 0.17 +0.3
2,132,155 - ABZR87_RS10040 0.23 -0.0
2,132,155 - ABZR87_RS10040 0.23 -2.0
2,132,155 - ABZR87_RS10040 0.23 +0.8
2,132,460 + ABZR87_RS10040 0.49 +0.8
2,132,461 - ABZR87_RS10040 0.50 -0.1
2,132,532 + ABZR87_RS10040 0.56 -0.2
2,132,532 + ABZR87_RS10040 0.56 -1.4
2,132,533 - ABZR87_RS10040 0.56 -2.9
2,132,533 - ABZR87_RS10040 0.56 -0.4
2,132,533 - ABZR87_RS10040 0.56 +1.9
2,132,611 - ABZR87_RS10040 0.62 -0.4
2,132,611 - ABZR87_RS10040 0.62 +0.0
2,132,642 + ABZR87_RS10040 0.65 +0.3
2,132,643 - ABZR87_RS10040 0.65 -0.4
2,132,646 + ABZR87_RS10040 0.65 +0.0
2,132,646 + ABZR87_RS10040 0.65 +0.9
2,132,646 + ABZR87_RS10040 0.65 -0.1
2,132,647 - ABZR87_RS10040 0.65 -0.9

Or see this region's nucleotide sequence