Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09520

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09515 and ABZR87_RS09520 are separated by 69 nucleotidesABZR87_RS09520 and ABZR87_RS09525 are separated by 131 nucleotides ABZR87_RS09515: ABZR87_RS09515 - cysteine synthase CysM, at 2,020,554 to 2,021,456 _RS09515 ABZR87_RS09520: ABZR87_RS09520 - lytic murein transglycosylase B, at 2,021,526 to 2,022,650 _RS09520 ABZR87_RS09525: ABZR87_RS09525 - histone deacetylase family protein, at 2,022,782 to 2,023,705 _RS09525 Position (kb) 2021 2022 2023Strain fitness (log2 ratio) -3 -2 -1 0 1at 2020.674 kb on - strand, within ABZR87_RS09515at 2021.022 kb on + strand, within ABZR87_RS09515at 2021.023 kb on - strand, within ABZR87_RS09515at 2021.186 kb on + strand, within ABZR87_RS09515at 2021.217 kb on + strand, within ABZR87_RS09515at 2021.489 kb on - strandat 2021.566 kb on + strandat 2021.566 kb on + strandat 2021.566 kb on + strandat 2021.567 kb on - strandat 2021.581 kb on + strandat 2021.581 kb on + strandat 2021.581 kb on + strandat 2021.581 kb on + strandat 2021.582 kb on - strandat 2021.614 kb on + strandat 2021.614 kb on + strandat 2021.615 kb on - strandat 2021.615 kb on - strandat 2021.615 kb on - strandat 2021.615 kb on - strandat 2021.615 kb on - strandat 2021.615 kb on - strandat 2021.621 kb on + strandat 2021.638 kb on + strandat 2021.639 kb on - strand, within ABZR87_RS09520at 2021.639 kb on - strand, within ABZR87_RS09520at 2021.767 kb on + strand, within ABZR87_RS09520at 2021.899 kb on - strand, within ABZR87_RS09520at 2021.899 kb on - strand, within ABZR87_RS09520at 2021.939 kb on - strand, within ABZR87_RS09520at 2021.950 kb on + strand, within ABZR87_RS09520at 2021.963 kb on + strand, within ABZR87_RS09520at 2021.964 kb on - strand, within ABZR87_RS09520at 2021.964 kb on - strand, within ABZR87_RS09520at 2021.964 kb on - strand, within ABZR87_RS09520at 2021.964 kb on - strand, within ABZR87_RS09520at 2022.001 kb on + strand, within ABZR87_RS09520at 2022.135 kb on + strand, within ABZR87_RS09520at 2022.175 kb on + strand, within ABZR87_RS09520at 2022.175 kb on + strand, within ABZR87_RS09520at 2022.176 kb on - strand, within ABZR87_RS09520at 2022.176 kb on - strand, within ABZR87_RS09520at 2022.251 kb on + strand, within ABZR87_RS09520at 2022.259 kb on + strand, within ABZR87_RS09520at 2022.259 kb on + strand, within ABZR87_RS09520at 2022.260 kb on - strand, within ABZR87_RS09520at 2022.407 kb on + strand, within ABZR87_RS09520at 2022.407 kb on + strand, within ABZR87_RS09520at 2022.407 kb on + strand, within ABZR87_RS09520at 2022.433 kb on + strand, within ABZR87_RS09520at 2022.434 kb on - strand, within ABZR87_RS09520at 2022.619 kb on - strandat 2022.681 kb on + strandat 2022.681 kb on + strandat 2022.682 kb on - strandat 2022.682 kb on - strandat 2022.682 kb on - strandat 2022.682 kb on - strandat 2022.738 kb on - strandat 2022.742 kb on + strandat 2022.742 kb on + strandat 2022.742 kb on + strandat 2022.797 kb on + strandat 2022.797 kb on + strandat 2022.797 kb on + strandat 2022.797 kb on + strandat 2022.798 kb on - strandat 2022.798 kb on - strandat 2022.971 kb on + strand, within ABZR87_RS09525at 2022.971 kb on + strand, within ABZR87_RS09525at 2022.971 kb on + strand, within ABZR87_RS09525at 2022.972 kb on - strand, within ABZR87_RS09525at 2023.011 kb on - strand, within ABZR87_RS09525at 2023.048 kb on + strand, within ABZR87_RS09525at 2023.048 kb on + strand, within ABZR87_RS09525at 2023.048 kb on + strand, within ABZR87_RS09525at 2023.048 kb on + strand, within ABZR87_RS09525at 2023.048 kb on + strand, within ABZR87_RS09525at 2023.048 kb on + strand, within ABZR87_RS09525at 2023.049 kb on - strand, within ABZR87_RS09525at 2023.049 kb on - strand, within ABZR87_RS09525at 2023.049 kb on - strand, within ABZR87_RS09525at 2023.049 kb on - strand, within ABZR87_RS09525at 2023.049 kb on - strand, within ABZR87_RS09525at 2023.049 kb on - strand, within ABZR87_RS09525at 2023.049 kb on - strand, within ABZR87_RS09525at 2023.049 kb on - strand, within ABZR87_RS09525at 2023.052 kb on + strand, within ABZR87_RS09525at 2023.052 kb on + strand, within ABZR87_RS09525at 2023.052 kb on + strand, within ABZR87_RS09525at 2023.052 kb on + strand, within ABZR87_RS09525at 2023.052 kb on + strand, within ABZR87_RS09525at 2023.052 kb on + strand, within ABZR87_RS09525at 2023.052 kb on + strand, within ABZR87_RS09525at 2023.052 kb on + strand, within ABZR87_RS09525at 2023.052 kb on + strand, within ABZR87_RS09525at 2023.052 kb on + strand, within ABZR87_RS09525at 2023.052 kb on + strand, within ABZR87_RS09525at 2023.052 kb on + strand, within ABZR87_RS09525at 2023.052 kb on + strand, within ABZR87_RS09525at 2023.052 kb on + strand, within ABZR87_RS09525at 2023.052 kb on + strand, within ABZR87_RS09525at 2023.052 kb on + strand, within ABZR87_RS09525at 2023.052 kb on + strand, within ABZR87_RS09525at 2023.052 kb on + strand, within ABZR87_RS09525at 2023.052 kb on + strand, within ABZR87_RS09525at 2023.052 kb on + strand, within ABZR87_RS09525at 2023.053 kb on - strand, within ABZR87_RS09525at 2023.053 kb on - strand, within ABZR87_RS09525at 2023.053 kb on - strand, within ABZR87_RS09525at 2023.053 kb on - strand, within ABZR87_RS09525at 2023.053 kb on - strand, within ABZR87_RS09525at 2023.053 kb on - strand, within ABZR87_RS09525at 2023.053 kb on - strand, within ABZR87_RS09525at 2023.053 kb on - strand, within ABZR87_RS09525at 2023.053 kb on - strand, within ABZR87_RS09525at 2023.053 kb on - strand, within ABZR87_RS09525at 2023.053 kb on - strand, within ABZR87_RS09525at 2023.053 kb on - strand, within ABZR87_RS09525at 2023.053 kb on - strand, within ABZR87_RS09525at 2023.053 kb on - strand, within ABZR87_RS09525at 2023.053 kb on - strand, within ABZR87_RS09525at 2023.053 kb on - strand, within ABZR87_RS09525at 2023.053 kb on - strand, within ABZR87_RS09525at 2023.053 kb on - strand, within ABZR87_RS09525at 2023.232 kb on + strand, within ABZR87_RS09525at 2023.233 kb on - strand, within ABZR87_RS09525at 2023.233 kb on - strand, within ABZR87_RS09525at 2023.303 kb on + strand, within ABZR87_RS09525at 2023.352 kb on + strand, within ABZR87_RS09525at 2023.352 kb on + strand, within ABZR87_RS09525at 2023.352 kb on + strand, within ABZR87_RS09525at 2023.352 kb on + strand, within ABZR87_RS09525at 2023.353 kb on - strand, within ABZR87_RS09525at 2023.353 kb on - strand, within ABZR87_RS09525at 2023.353 kb on - strand, within ABZR87_RS09525at 2023.353 kb on - strand, within ABZR87_RS09525at 2023.358 kb on + strand, within ABZR87_RS09525at 2023.359 kb on - strand, within ABZR87_RS09525at 2023.413 kb on - strand, within ABZR87_RS09525at 2023.413 kb on - strand, within ABZR87_RS09525at 2023.563 kb on - strand, within ABZR87_RS09525at 2023.563 kb on - strand, within ABZR87_RS09525at 2023.563 kb on - strand, within ABZR87_RS09525at 2023.643 kb on + strandat 2023.643 kb on + strandat 2023.643 kb on + strandat 2023.644 kb on - strandat 2023.644 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,020,674 - ABZR87_RS09515 0.13 -0.5
2,021,022 + ABZR87_RS09515 0.52 -0.5
2,021,023 - ABZR87_RS09515 0.52 +0.0
2,021,186 + ABZR87_RS09515 0.70 +1.0
2,021,217 + ABZR87_RS09515 0.73 +1.0
2,021,489 - +1.2
2,021,566 + +0.7
2,021,566 + +0.2
2,021,566 + +0.2
2,021,567 - +0.2
2,021,581 + +0.2
2,021,581 + +0.7
2,021,581 + +0.2
2,021,581 + +0.3
2,021,582 - +0.5
2,021,614 + +0.1
2,021,614 + +0.2
2,021,615 - +0.1
2,021,615 - -0.2
2,021,615 - +1.2
2,021,615 - +0.3
2,021,615 - +1.0
2,021,615 - -0.4
2,021,621 + +0.4
2,021,638 + +1.2
2,021,639 - ABZR87_RS09520 0.10 +0.5
2,021,639 - ABZR87_RS09520 0.10 +0.2
2,021,767 + ABZR87_RS09520 0.21 -0.4
2,021,899 - ABZR87_RS09520 0.33 +0.9
2,021,899 - ABZR87_RS09520 0.33 +1.5
2,021,939 - ABZR87_RS09520 0.37 +0.4
2,021,950 + ABZR87_RS09520 0.38 -0.4
2,021,963 + ABZR87_RS09520 0.39 -0.8
2,021,964 - ABZR87_RS09520 0.39 -0.0
2,021,964 - ABZR87_RS09520 0.39 -0.2
2,021,964 - ABZR87_RS09520 0.39 -0.1
2,021,964 - ABZR87_RS09520 0.39 +0.6
2,022,001 + ABZR87_RS09520 0.42 +0.2
2,022,135 + ABZR87_RS09520 0.54 -0.8
2,022,175 + ABZR87_RS09520 0.58 +0.3
2,022,175 + ABZR87_RS09520 0.58 -0.4
2,022,176 - ABZR87_RS09520 0.58 -0.3
2,022,176 - ABZR87_RS09520 0.58 -0.2
2,022,251 + ABZR87_RS09520 0.64 -0.4
2,022,259 + ABZR87_RS09520 0.65 -0.2
2,022,259 + ABZR87_RS09520 0.65 +0.0
2,022,260 - ABZR87_RS09520 0.65 -0.0
2,022,407 + ABZR87_RS09520 0.78 +1.6
2,022,407 + ABZR87_RS09520 0.78 -0.2
2,022,407 + ABZR87_RS09520 0.78 +1.0
2,022,433 + ABZR87_RS09520 0.81 -0.8
2,022,434 - ABZR87_RS09520 0.81 -1.3
2,022,619 - +0.6
2,022,681 + +0.4
2,022,681 + -0.3
2,022,682 - +0.0
2,022,682 - +0.7
2,022,682 - -0.1
2,022,682 - +0.1
2,022,738 - -0.3
2,022,742 + +1.4
2,022,742 + +0.1
2,022,742 + +0.5
2,022,797 + -2.1
2,022,797 + -1.5
2,022,797 + -0.2
2,022,797 + -1.1
2,022,798 - -1.7
2,022,798 - -0.9
2,022,971 + ABZR87_RS09525 0.20 -1.1
2,022,971 + ABZR87_RS09525 0.20 -1.8
2,022,971 + ABZR87_RS09525 0.20 -0.8
2,022,972 - ABZR87_RS09525 0.21 -0.4
2,023,011 - ABZR87_RS09525 0.25 -2.7
2,023,048 + ABZR87_RS09525 0.29 -1.4
2,023,048 + ABZR87_RS09525 0.29 -2.1
2,023,048 + ABZR87_RS09525 0.29 -1.0
2,023,048 + ABZR87_RS09525 0.29 -0.4
2,023,048 + ABZR87_RS09525 0.29 -1.8
2,023,048 + ABZR87_RS09525 0.29 -1.8
2,023,049 - ABZR87_RS09525 0.29 -0.8
2,023,049 - ABZR87_RS09525 0.29 -1.3
2,023,049 - ABZR87_RS09525 0.29 +0.3
2,023,049 - ABZR87_RS09525 0.29 +0.5
2,023,049 - ABZR87_RS09525 0.29 -1.7
2,023,049 - ABZR87_RS09525 0.29 -1.0
2,023,049 - ABZR87_RS09525 0.29 -0.5
2,023,049 - ABZR87_RS09525 0.29 +0.6
2,023,052 + ABZR87_RS09525 0.29 +0.0
2,023,052 + ABZR87_RS09525 0.29 -0.5
2,023,052 + ABZR87_RS09525 0.29 -2.7
2,023,052 + ABZR87_RS09525 0.29 -1.4
2,023,052 + ABZR87_RS09525 0.29 -0.4
2,023,052 + ABZR87_RS09525 0.29 -1.7
2,023,052 + ABZR87_RS09525 0.29 -0.8
2,023,052 + ABZR87_RS09525 0.29 -0.5
2,023,052 + ABZR87_RS09525 0.29 -1.0
2,023,052 + ABZR87_RS09525 0.29 -2.7
2,023,052 + ABZR87_RS09525 0.29 -0.9
2,023,052 + ABZR87_RS09525 0.29 -0.5
2,023,052 + ABZR87_RS09525 0.29 -1.9
2,023,052 + ABZR87_RS09525 0.29 -1.8
2,023,052 + ABZR87_RS09525 0.29 -0.6
2,023,052 + ABZR87_RS09525 0.29 -1.1
2,023,052 + ABZR87_RS09525 0.29 +0.6
2,023,052 + ABZR87_RS09525 0.29 -1.5
2,023,052 + ABZR87_RS09525 0.29 +0.8
2,023,052 + ABZR87_RS09525 0.29 -2.5
2,023,053 - ABZR87_RS09525 0.29 +0.3
2,023,053 - ABZR87_RS09525 0.29 +0.1
2,023,053 - ABZR87_RS09525 0.29 -0.2
2,023,053 - ABZR87_RS09525 0.29 +0.0
2,023,053 - ABZR87_RS09525 0.29 -2.1
2,023,053 - ABZR87_RS09525 0.29 -2.8
2,023,053 - ABZR87_RS09525 0.29 +0.0
2,023,053 - ABZR87_RS09525 0.29 -1.2
2,023,053 - ABZR87_RS09525 0.29 -1.4
2,023,053 - ABZR87_RS09525 0.29 -0.3
2,023,053 - ABZR87_RS09525 0.29 -0.8
2,023,053 - ABZR87_RS09525 0.29 +0.0
2,023,053 - ABZR87_RS09525 0.29 -1.0
2,023,053 - ABZR87_RS09525 0.29 -1.2
2,023,053 - ABZR87_RS09525 0.29 -0.8
2,023,053 - ABZR87_RS09525 0.29 +0.6
2,023,053 - ABZR87_RS09525 0.29 -0.9
2,023,053 - ABZR87_RS09525 0.29 -1.4
2,023,232 + ABZR87_RS09525 0.49 -1.0
2,023,233 - ABZR87_RS09525 0.49 -1.1
2,023,233 - ABZR87_RS09525 0.49 -1.6
2,023,303 + ABZR87_RS09525 0.56 -1.8
2,023,352 + ABZR87_RS09525 0.62 -1.4
2,023,352 + ABZR87_RS09525 0.62 -1.3
2,023,352 + ABZR87_RS09525 0.62 -1.2
2,023,352 + ABZR87_RS09525 0.62 -2.2
2,023,353 - ABZR87_RS09525 0.62 -2.8
2,023,353 - ABZR87_RS09525 0.62 -0.2
2,023,353 - ABZR87_RS09525 0.62 -0.3
2,023,353 - ABZR87_RS09525 0.62 -0.6
2,023,358 + ABZR87_RS09525 0.62 -2.4
2,023,359 - ABZR87_RS09525 0.62 -1.7
2,023,413 - ABZR87_RS09525 0.68 -0.1
2,023,413 - ABZR87_RS09525 0.68 -1.2
2,023,563 - ABZR87_RS09525 0.85 -3.0
2,023,563 - ABZR87_RS09525 0.85 +0.3
2,023,563 - ABZR87_RS09525 0.85 -1.3
2,023,643 + -1.4
2,023,643 + -2.3
2,023,643 + -1.7
2,023,644 - -1.0
2,023,644 - -0.4

Or see this region's nucleotide sequence