Experiment: Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0478 and BT0479 are separated by 156 nucleotides BT0479 and BT0480 are separated by 57 nucleotides
BT0478: BT0478 - conserved hypothetical protein (NCBI ptt file), at 588,568 to 589,674
BT0478
BT0479: BT0479 - putative glycosyltransferase (NCBI ptt file), at 589,831 to 590,655
BT0479
BT0480: BT0480 - glycosyltransferase (NCBI ptt file), at 590,713 to 592,119
BT0480
Position (kb) 589
590
591 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 588.901 kb on - strand, within BT0478 at 588.926 kb on - strand, within BT0478 at 589.005 kb on - strand, within BT0478 at 589.020 kb on + strand, within BT0478 at 589.020 kb on + strand, within BT0478 at 589.141 kb on - strand, within BT0478 at 589.256 kb on + strand, within BT0478 at 589.379 kb on - strand, within BT0478 at 589.381 kb on - strand, within BT0478 at 589.452 kb on - strand, within BT0478 at 589.593 kb on - strand at 589.624 kb on - strand at 589.763 kb on - strand at 589.763 kb on - strand at 589.849 kb on - strand at 589.968 kb on + strand, within BT0479 at 590.046 kb on + strand, within BT0479 at 590.082 kb on + strand, within BT0479 at 590.135 kb on + strand, within BT0479 at 590.306 kb on - strand, within BT0479 at 590.431 kb on - strand, within BT0479 at 590.569 kb on - strand, within BT0479 at 590.682 kb on - strand at 590.701 kb on + strand at 590.736 kb on + strand at 590.772 kb on - strand at 590.877 kb on - strand, within BT0480 at 590.968 kb on - strand, within BT0480 at 591.395 kb on - strand, within BT0480 at 591.395 kb on - strand, within BT0480 at 591.442 kb on - strand, within BT0480 at 591.477 kb on - strand, within BT0480 at 591.573 kb on - strand, within BT0480 at 591.606 kb on - strand, within BT0480 at 591.609 kb on - strand, within BT0480
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol% remove 588,901 - BT0478 0.30 -1.6 588,926 - BT0478 0.32 -0.9 589,005 - BT0478 0.39 +0.1 589,020 + BT0478 0.41 +0.1 589,020 + BT0478 0.41 -2.8 589,141 - BT0478 0.52 -2.3 589,256 + BT0478 0.62 -2.3 589,379 - BT0478 0.73 -2.5 589,381 - BT0478 0.73 -2.5 589,452 - BT0478 0.80 +0.1 589,593 - -1.5 589,624 - -0.8 589,763 - -1.9 589,763 - +0.1 589,849 - -0.5 589,968 + BT0479 0.17 -3.3 590,046 + BT0479 0.26 -2.8 590,082 + BT0479 0.30 +0.1 590,135 + BT0479 0.37 -0.9 590,306 - BT0479 0.58 -0.9 590,431 - BT0479 0.73 -1.5 590,569 - BT0479 0.89 -1.9 590,682 - -0.7 590,701 + -2.5 590,736 + -1.4 590,772 - -0.9 590,877 - BT0480 0.12 -0.5 590,968 - BT0480 0.18 +0.4 591,395 - BT0480 0.48 -0.9 591,395 - BT0480 0.48 -0.9 591,442 - BT0480 0.52 -0.2 591,477 - BT0480 0.54 +1.6 591,573 - BT0480 0.61 -2.6 591,606 - BT0480 0.63 -1.9 591,609 - BT0480 0.64 -2.9
Or see this region's nucleotide sequence