Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS23055

Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS23050 and RS_RS23055 are separated by 1 nucleotidesRS_RS23055 and RS_RS23060 are separated by 333 nucleotides RS_RS23050: RS_RS23050 - (dimethylallyl)adenosine tRNA methylthiotransferase, at 1,560,391 to 1,561,107 _RS23050 RS_RS23055: RS_RS23055 - hypothetical protein, at 1,561,109 to 1,561,696 _RS23055 RS_RS23060: RS_RS23060 - LLM class flavin-dependent oxidoreductase, at 1,562,030 to 1,563,004 _RS23060 Position (kb) 1561 1562Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1560.468 kb on - strand, within RS_RS23050at 1560.585 kb on + strand, within RS_RS23050at 1560.586 kb on - strand, within RS_RS23050at 1560.923 kb on + strand, within RS_RS23050at 1561.091 kb on + strandat 1561.092 kb on - strandat 1561.092 kb on - strandat 1561.092 kb on - strandat 1561.094 kb on - strandat 1561.094 kb on - strandat 1561.094 kb on - strandat 1561.442 kb on - strand, within RS_RS23055at 1561.442 kb on - strand, within RS_RS23055at 1561.696 kb on + strandat 1561.832 kb on + strandat 1561.910 kb on + strandat 1561.910 kb on + strandat 1561.910 kb on + strandat 1562.083 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
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1,560,468 - RS_RS23050 0.11 -0.6
1,560,585 + RS_RS23050 0.27 -0.0
1,560,586 - RS_RS23050 0.27 +0.7
1,560,923 + RS_RS23050 0.74 +1.0
1,561,091 + -0.5
1,561,092 - +0.2
1,561,092 - -0.2
1,561,092 - -0.2
1,561,094 - +0.2
1,561,094 - -1.9
1,561,094 - +0.1
1,561,442 - RS_RS23055 0.57 -0.9
1,561,442 - RS_RS23055 0.57 -0.1
1,561,696 + -0.2
1,561,832 + +0.4
1,561,910 + -0.2
1,561,910 + +0.5
1,561,910 + +3.0
1,562,083 - +0.4

Or see this region's nucleotide sequence