Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04185 and HSERO_RS04190 are separated by 0 nucleotides HSERO_RS04190 and HSERO_RS04195 are separated by 117 nucleotides
HSERO_RS04185: HSERO_RS04185 - tRNA delta(2)-isopentenylpyrophosphate transferase, at 915,600 to 916,547
_RS04185
HSERO_RS04190: HSERO_RS04190 - DNA mismatch repair protein, at 916,548 to 918,473
_RS04190
HSERO_RS04195: HSERO_RS04195 - methyl-accepting chemotaxis protein, at 918,591 to 920,564
_RS04195
Position (kb) 916
917
918
919 Strain fitness (log2 ratio) -2
-1
0
1 at 916.895 kb on - strand, within HSERO_RS04190 at 917.013 kb on - strand, within HSERO_RS04190 at 917.013 kb on - strand, within HSERO_RS04190 at 917.013 kb on - strand, within HSERO_RS04190 at 917.013 kb on - strand at 917.211 kb on + strand, within HSERO_RS04190 at 917.305 kb on + strand, within HSERO_RS04190 at 917.671 kb on + strand, within HSERO_RS04190 at 917.929 kb on - strand, within HSERO_RS04190 at 917.934 kb on - strand, within HSERO_RS04190 at 917.934 kb on - strand at 918.092 kb on - strand, within HSERO_RS04190 at 918.273 kb on + strand, within HSERO_RS04190 at 918.302 kb on - strand at 918.342 kb on - strand at 918.478 kb on + strand at 918.478 kb on + strand at 918.614 kb on - strand at 918.685 kb on - strand at 919.118 kb on + strand, within HSERO_RS04195 at 919.150 kb on + strand, within HSERO_RS04195 at 919.180 kb on - strand, within HSERO_RS04195 at 919.214 kb on - strand, within HSERO_RS04195 at 919.274 kb on + strand, within HSERO_RS04195 at 919.339 kb on + strand, within HSERO_RS04195 at 919.392 kb on - strand, within HSERO_RS04195 at 919.403 kb on + strand, within HSERO_RS04195 at 919.411 kb on - strand, within HSERO_RS04195
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 916,895 - HSERO_RS04190 0.18 -1.0 917,013 - HSERO_RS04190 0.24 -0.4 917,013 - HSERO_RS04190 0.24 -0.8 917,013 - HSERO_RS04190 0.24 -0.9 917,013 - -0.9 917,211 + HSERO_RS04190 0.34 -1.6 917,305 + HSERO_RS04190 0.39 -2.2 917,671 + HSERO_RS04190 0.58 -2.1 917,929 - HSERO_RS04190 0.72 +0.2 917,934 - HSERO_RS04190 0.72 +0.1 917,934 - +1.0 918,092 - HSERO_RS04190 0.80 -0.6 918,273 + HSERO_RS04190 0.90 -1.2 918,302 - -0.2 918,342 - +0.0 918,478 + -2.4 918,478 + +0.9 918,614 - -0.1 918,685 - -0.5 919,118 + HSERO_RS04195 0.27 +0.1 919,150 + HSERO_RS04195 0.28 -0.7 919,180 - HSERO_RS04195 0.30 +0.1 919,214 - HSERO_RS04195 0.32 +0.9 919,274 + HSERO_RS04195 0.35 +0.2 919,339 + HSERO_RS04195 0.38 +0.9 919,392 - HSERO_RS04195 0.41 -0.4 919,403 + HSERO_RS04195 0.41 -0.9 919,411 - HSERO_RS04195 0.42 -0.1
Or see this region's nucleotide sequence