Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23220

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS23215 and ABZR87_RS23220 are separated by 42 nucleotidesABZR87_RS23220 and ABZR87_RS23225 are separated by 6 nucleotides ABZR87_RS23215: ABZR87_RS23215 - D-xylose ABC transporter substrate-binding protein, at 1,570,711 to 1,571,721 _RS23215 ABZR87_RS23220: ABZR87_RS23220 - xylose ABC transporter ATP-binding protein, at 1,571,764 to 1,573,311 _RS23220 ABZR87_RS23225: ABZR87_RS23225 - sugar ABC transporter permease, at 1,573,318 to 1,574,520 _RS23225 Position (kb) 1571 1572 1573 1574Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1570.856 kb on - strand, within ABZR87_RS23215at 1571.053 kb on + strand, within ABZR87_RS23215at 1571.089 kb on + strand, within ABZR87_RS23215at 1571.164 kb on + strand, within ABZR87_RS23215at 1571.164 kb on + strand, within ABZR87_RS23215at 1571.164 kb on + strand, within ABZR87_RS23215at 1571.164 kb on + strand, within ABZR87_RS23215at 1571.165 kb on - strand, within ABZR87_RS23215at 1571.165 kb on - strand, within ABZR87_RS23215at 1571.242 kb on + strand, within ABZR87_RS23215at 1571.509 kb on + strand, within ABZR87_RS23215at 1571.509 kb on + strand, within ABZR87_RS23215at 1571.509 kb on + strand, within ABZR87_RS23215at 1571.510 kb on - strand, within ABZR87_RS23215at 1571.510 kb on - strand, within ABZR87_RS23215at 1571.692 kb on + strandat 1571.692 kb on + strandat 1571.692 kb on + strandat 1571.692 kb on + strandat 1571.692 kb on + strandat 1571.693 kb on - strandat 1571.693 kb on - strandat 1571.693 kb on - strandat 1571.694 kb on + strandat 1571.695 kb on - strandat 1571.695 kb on - strandat 1571.695 kb on - strandat 1571.719 kb on + strandat 1571.719 kb on + strandat 1571.719 kb on + strandat 1571.720 kb on - strandat 1571.746 kb on - strandat 1571.746 kb on - strandat 1571.746 kb on - strandat 1571.752 kb on + strandat 1571.773 kb on - strandat 1571.932 kb on + strand, within ABZR87_RS23220at 1571.933 kb on - strand, within ABZR87_RS23220at 1571.933 kb on - strand, within ABZR87_RS23220at 1572.121 kb on + strand, within ABZR87_RS23220at 1572.122 kb on - strand, within ABZR87_RS23220at 1572.197 kb on + strand, within ABZR87_RS23220at 1572.198 kb on - strand, within ABZR87_RS23220at 1572.205 kb on + strand, within ABZR87_RS23220at 1572.206 kb on - strand, within ABZR87_RS23220at 1572.367 kb on + strand, within ABZR87_RS23220at 1572.367 kb on + strand, within ABZR87_RS23220at 1572.367 kb on + strand, within ABZR87_RS23220at 1572.368 kb on - strand, within ABZR87_RS23220at 1573.099 kb on + strand, within ABZR87_RS23220at 1573.108 kb on + strand, within ABZR87_RS23220at 1573.108 kb on + strand, within ABZR87_RS23220at 1573.108 kb on + strand, within ABZR87_RS23220at 1573.108 kb on + strand, within ABZR87_RS23220at 1573.108 kb on + strand, within ABZR87_RS23220at 1573.108 kb on + strand, within ABZR87_RS23220at 1573.109 kb on - strand, within ABZR87_RS23220at 1573.109 kb on - strand, within ABZR87_RS23220at 1573.109 kb on - strand, within ABZR87_RS23220at 1573.109 kb on - strand, within ABZR87_RS23220at 1573.109 kb on - strand, within ABZR87_RS23220at 1573.414 kb on + strandat 1573.465 kb on + strand, within ABZR87_RS23225at 1573.465 kb on + strand, within ABZR87_RS23225at 1573.466 kb on - strand, within ABZR87_RS23225at 1574.104 kb on + strand, within ABZR87_RS23225at 1574.104 kb on + strand, within ABZR87_RS23225at 1574.104 kb on + strand, within ABZR87_RS23225at 1574.104 kb on + strand, within ABZR87_RS23225at 1574.140 kb on + strand, within ABZR87_RS23225at 1574.140 kb on + strand, within ABZR87_RS23225at 1574.140 kb on + strand, within ABZR87_RS23225at 1574.140 kb on + strand, within ABZR87_RS23225

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,570,856 - ABZR87_RS23215 0.14 -0.5
1,571,053 + ABZR87_RS23215 0.34 -4.6
1,571,089 + ABZR87_RS23215 0.37 -2.1
1,571,164 + ABZR87_RS23215 0.45 -0.6
1,571,164 + ABZR87_RS23215 0.45 -1.2
1,571,164 + ABZR87_RS23215 0.45 -4.0
1,571,164 + ABZR87_RS23215 0.45 -2.7
1,571,165 - ABZR87_RS23215 0.45 -2.9
1,571,165 - ABZR87_RS23215 0.45 -2.1
1,571,242 + ABZR87_RS23215 0.53 -3.8
1,571,509 + ABZR87_RS23215 0.79 -4.1
1,571,509 + ABZR87_RS23215 0.79 -3.3
1,571,509 + ABZR87_RS23215 0.79 -1.7
1,571,510 - ABZR87_RS23215 0.79 -3.6
1,571,510 - ABZR87_RS23215 0.79 +1.1
1,571,692 + -1.2
1,571,692 + -2.7
1,571,692 + -0.7
1,571,692 + -2.6
1,571,692 + -5.0
1,571,693 - -0.7
1,571,693 - -3.6
1,571,693 - -1.3
1,571,694 + -2.7
1,571,695 - -4.7
1,571,695 - -3.3
1,571,695 - -1.9
1,571,719 + -1.5
1,571,719 + -2.2
1,571,719 + -0.9
1,571,720 - -0.8
1,571,746 - -1.8
1,571,746 - -3.6
1,571,746 - -3.1
1,571,752 + -0.3
1,571,773 - -2.8
1,571,932 + ABZR87_RS23220 0.11 -1.7
1,571,933 - ABZR87_RS23220 0.11 -2.7
1,571,933 - ABZR87_RS23220 0.11 -2.7
1,572,121 + ABZR87_RS23220 0.23 -4.0
1,572,122 - ABZR87_RS23220 0.23 -3.3
1,572,197 + ABZR87_RS23220 0.28 -2.0
1,572,198 - ABZR87_RS23220 0.28 -4.0
1,572,205 + ABZR87_RS23220 0.28 -2.1
1,572,206 - ABZR87_RS23220 0.29 -1.4
1,572,367 + ABZR87_RS23220 0.39 -2.9
1,572,367 + ABZR87_RS23220 0.39 -1.7
1,572,367 + ABZR87_RS23220 0.39 -1.6
1,572,368 - ABZR87_RS23220 0.39 -2.7
1,573,099 + ABZR87_RS23220 0.86 -2.9
1,573,108 + ABZR87_RS23220 0.87 -3.6
1,573,108 + ABZR87_RS23220 0.87 -2.0
1,573,108 + ABZR87_RS23220 0.87 -3.0
1,573,108 + ABZR87_RS23220 0.87 -1.6
1,573,108 + ABZR87_RS23220 0.87 -0.9
1,573,108 + ABZR87_RS23220 0.87 -3.4
1,573,109 - ABZR87_RS23220 0.87 -2.3
1,573,109 - ABZR87_RS23220 0.87 -1.4
1,573,109 - ABZR87_RS23220 0.87 -3.6
1,573,109 - ABZR87_RS23220 0.87 -2.9
1,573,109 - ABZR87_RS23220 0.87 -3.2
1,573,414 + -2.1
1,573,465 + ABZR87_RS23225 0.12 -2.0
1,573,465 + ABZR87_RS23225 0.12 -3.4
1,573,466 - ABZR87_RS23225 0.12 -3.1
1,574,104 + ABZR87_RS23225 0.65 -2.0
1,574,104 + ABZR87_RS23225 0.65 -2.7
1,574,104 + ABZR87_RS23225 0.65 -5.1
1,574,104 + ABZR87_RS23225 0.65 -3.6
1,574,140 + ABZR87_RS23225 0.68 -2.9
1,574,140 + ABZR87_RS23225 0.68 +2.7
1,574,140 + ABZR87_RS23225 0.68 -1.8
1,574,140 + ABZR87_RS23225 0.68 -2.8

Or see this region's nucleotide sequence