Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23190

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS23180 and ABZR87_RS23185 overlap by 4 nucleotidesABZR87_RS23185 and ABZR87_RS23190 overlap by 1 nucleotidesABZR87_RS23190 and ABZR87_RS23195 are separated by 58 nucleotides ABZR87_RS23180: ABZR87_RS23180 - ABC transporter ATP-binding protein, at 1,563,514 to 1,564,284 _RS23180 ABZR87_RS23185: ABZR87_RS23185 - branched-chain amino acid ABC transporter permease, at 1,564,281 to 1,565,249 _RS23185 ABZR87_RS23190: ABZR87_RS23190 - branched-chain amino acid ABC transporter permease, at 1,565,249 to 1,566,106 _RS23190 ABZR87_RS23195: ABZR87_RS23195 - ABC transporter substrate-binding protein, at 1,566,165 to 1,567,364 _RS23195 Position (kb) 1565 1566 1567Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1564.459 kb on + strand, within ABZR87_RS23185at 1564.459 kb on + strand, within ABZR87_RS23185at 1564.459 kb on + strand, within ABZR87_RS23185at 1564.459 kb on + strand, within ABZR87_RS23185at 1564.460 kb on - strand, within ABZR87_RS23185at 1564.460 kb on - strand, within ABZR87_RS23185at 1564.460 kb on - strand, within ABZR87_RS23185at 1564.543 kb on + strand, within ABZR87_RS23185at 1564.544 kb on - strand, within ABZR87_RS23185at 1564.544 kb on - strand, within ABZR87_RS23185at 1564.551 kb on - strand, within ABZR87_RS23185at 1564.781 kb on - strand, within ABZR87_RS23185at 1564.781 kb on - strand, within ABZR87_RS23185at 1564.864 kb on + strand, within ABZR87_RS23185at 1564.865 kb on - strand, within ABZR87_RS23185at 1564.865 kb on - strand, within ABZR87_RS23185at 1564.877 kb on - strand, within ABZR87_RS23185at 1564.877 kb on - strand, within ABZR87_RS23185at 1564.877 kb on - strand, within ABZR87_RS23185at 1564.915 kb on + strand, within ABZR87_RS23185at 1564.915 kb on + strand, within ABZR87_RS23185at 1564.916 kb on - strand, within ABZR87_RS23185at 1564.916 kb on - strand, within ABZR87_RS23185at 1564.916 kb on - strand, within ABZR87_RS23185at 1564.916 kb on - strand, within ABZR87_RS23185at 1565.041 kb on + strand, within ABZR87_RS23185at 1565.042 kb on - strand, within ABZR87_RS23185at 1565.059 kb on + strand, within ABZR87_RS23185at 1565.092 kb on + strand, within ABZR87_RS23185at 1565.131 kb on + strand, within ABZR87_RS23185at 1565.132 kb on - strand, within ABZR87_RS23185at 1565.139 kb on + strand, within ABZR87_RS23185at 1565.140 kb on - strand, within ABZR87_RS23185at 1565.230 kb on - strandat 1565.307 kb on + strandat 1565.307 kb on + strandat 1565.307 kb on + strandat 1565.308 kb on - strandat 1565.666 kb on - strand, within ABZR87_RS23190at 1565.666 kb on - strand, within ABZR87_RS23190at 1565.847 kb on + strand, within ABZR87_RS23190at 1565.964 kb on + strand, within ABZR87_RS23190at 1565.964 kb on + strand, within ABZR87_RS23190at 1565.964 kb on + strand, within ABZR87_RS23190at 1565.964 kb on + strand, within ABZR87_RS23190at 1565.964 kb on + strand, within ABZR87_RS23190at 1565.964 kb on + strand, within ABZR87_RS23190at 1565.964 kb on + strand, within ABZR87_RS23190at 1565.965 kb on - strand, within ABZR87_RS23190at 1565.965 kb on - strand, within ABZR87_RS23190at 1565.965 kb on - strand, within ABZR87_RS23190at 1565.965 kb on - strand, within ABZR87_RS23190at 1565.979 kb on + strand, within ABZR87_RS23190at 1565.979 kb on + strand, within ABZR87_RS23190at 1566.054 kb on + strandat 1566.054 kb on + strandat 1566.055 kb on - strandat 1566.055 kb on - strandat 1566.055 kb on - strandat 1566.096 kb on + strandat 1566.096 kb on + strandat 1566.096 kb on + strandat 1566.097 kb on - strandat 1566.097 kb on - strandat 1566.117 kb on + strandat 1566.117 kb on + strandat 1566.158 kb on + strandat 1566.159 kb on - strandat 1566.159 kb on - strandat 1566.159 kb on - strandat 1566.280 kb on + strandat 1566.281 kb on - strandat 1566.281 kb on - strandat 1566.283 kb on + strandat 1566.283 kb on + strandat 1566.283 kb on + strandat 1566.283 kb on + strandat 1566.283 kb on + strandat 1566.284 kb on - strandat 1566.284 kb on - strandat 1566.284 kb on - strandat 1566.284 kb on - strandat 1566.284 kb on - strandat 1566.284 kb on - strandat 1566.284 kb on - strandat 1566.343 kb on + strand, within ABZR87_RS23195at 1566.344 kb on - strand, within ABZR87_RS23195at 1566.344 kb on - strand, within ABZR87_RS23195at 1566.431 kb on + strand, within ABZR87_RS23195at 1566.431 kb on + strand, within ABZR87_RS23195at 1566.434 kb on - strand, within ABZR87_RS23195at 1566.452 kb on - strand, within ABZR87_RS23195at 1566.452 kb on - strand, within ABZR87_RS23195at 1566.452 kb on - strand, within ABZR87_RS23195at 1566.512 kb on + strand, within ABZR87_RS23195at 1566.544 kb on + strand, within ABZR87_RS23195at 1566.544 kb on + strand, within ABZR87_RS23195at 1566.545 kb on - strand, within ABZR87_RS23195at 1566.731 kb on - strand, within ABZR87_RS23195at 1566.763 kb on + strand, within ABZR87_RS23195at 1566.763 kb on + strand, within ABZR87_RS23195at 1566.763 kb on + strand, within ABZR87_RS23195at 1566.763 kb on + strand, within ABZR87_RS23195at 1566.763 kb on + strand, within ABZR87_RS23195at 1566.764 kb on - strand, within ABZR87_RS23195at 1566.841 kb on + strand, within ABZR87_RS23195at 1566.841 kb on + strand, within ABZR87_RS23195at 1566.841 kb on + strand, within ABZR87_RS23195at 1566.841 kb on + strand, within ABZR87_RS23195at 1566.842 kb on - strand, within ABZR87_RS23195at 1566.859 kb on + strand, within ABZR87_RS23195at 1566.922 kb on + strand, within ABZR87_RS23195at 1566.922 kb on + strand, within ABZR87_RS23195at 1566.922 kb on + strand, within ABZR87_RS23195at 1566.922 kb on + strand, within ABZR87_RS23195at 1566.922 kb on + strand, within ABZR87_RS23195at 1566.923 kb on - strand, within ABZR87_RS23195

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,564,459 + ABZR87_RS23185 0.18 -0.5
1,564,459 + ABZR87_RS23185 0.18 -0.2
1,564,459 + ABZR87_RS23185 0.18 -0.3
1,564,459 + ABZR87_RS23185 0.18 -0.2
1,564,460 - ABZR87_RS23185 0.18 -0.1
1,564,460 - ABZR87_RS23185 0.18 +0.1
1,564,460 - ABZR87_RS23185 0.18 +0.5
1,564,543 + ABZR87_RS23185 0.27 -0.0
1,564,544 - ABZR87_RS23185 0.27 -0.8
1,564,544 - ABZR87_RS23185 0.27 -0.8
1,564,551 - ABZR87_RS23185 0.28 -0.8
1,564,781 - ABZR87_RS23185 0.52 -1.4
1,564,781 - ABZR87_RS23185 0.52 +0.4
1,564,864 + ABZR87_RS23185 0.60 -0.9
1,564,865 - ABZR87_RS23185 0.60 +1.5
1,564,865 - ABZR87_RS23185 0.60 -0.5
1,564,877 - ABZR87_RS23185 0.62 +0.4
1,564,877 - ABZR87_RS23185 0.62 +0.1
1,564,877 - ABZR87_RS23185 0.62 +0.3
1,564,915 + ABZR87_RS23185 0.65 +1.6
1,564,915 + ABZR87_RS23185 0.65 -1.2
1,564,916 - ABZR87_RS23185 0.66 -2.5
1,564,916 - ABZR87_RS23185 0.66 -0.0
1,564,916 - ABZR87_RS23185 0.66 +0.1
1,564,916 - ABZR87_RS23185 0.66 +0.4
1,565,041 + ABZR87_RS23185 0.78 -0.4
1,565,042 - ABZR87_RS23185 0.79 +0.7
1,565,059 + ABZR87_RS23185 0.80 -0.5
1,565,092 + ABZR87_RS23185 0.84 -0.1
1,565,131 + ABZR87_RS23185 0.88 -1.4
1,565,132 - ABZR87_RS23185 0.88 -0.2
1,565,139 + ABZR87_RS23185 0.89 +0.4
1,565,140 - ABZR87_RS23185 0.89 +0.0
1,565,230 - +0.2
1,565,307 + -2.3
1,565,307 + +0.4
1,565,307 + +0.3
1,565,308 - -0.2
1,565,666 - ABZR87_RS23190 0.49 -0.5
1,565,666 - ABZR87_RS23190 0.49 -1.2
1,565,847 + ABZR87_RS23190 0.70 -1.2
1,565,964 + ABZR87_RS23190 0.83 +0.5
1,565,964 + ABZR87_RS23190 0.83 -0.1
1,565,964 + ABZR87_RS23190 0.83 -0.9
1,565,964 + ABZR87_RS23190 0.83 -0.8
1,565,964 + ABZR87_RS23190 0.83 -0.8
1,565,964 + ABZR87_RS23190 0.83 -0.9
1,565,964 + ABZR87_RS23190 0.83 -1.0
1,565,965 - ABZR87_RS23190 0.83 +0.8
1,565,965 - ABZR87_RS23190 0.83 -0.3
1,565,965 - ABZR87_RS23190 0.83 +0.3
1,565,965 - ABZR87_RS23190 0.83 +0.3
1,565,979 + ABZR87_RS23190 0.85 -1.0
1,565,979 + ABZR87_RS23190 0.85 -1.1
1,566,054 + -0.6
1,566,054 + -0.1
1,566,055 - +1.1
1,566,055 - -0.9
1,566,055 - -1.3
1,566,096 + -0.6
1,566,096 + +0.2
1,566,096 + +0.2
1,566,097 - +0.3
1,566,097 - +0.1
1,566,117 + -0.0
1,566,117 + -0.1
1,566,158 + -1.7
1,566,159 - -0.3
1,566,159 - -0.1
1,566,159 - -1.9
1,566,280 + +0.3
1,566,281 - +1.8
1,566,281 - +0.7
1,566,283 + +0.6
1,566,283 + -0.2
1,566,283 + -0.2
1,566,283 + +0.6
1,566,283 + -0.4
1,566,284 - -0.0
1,566,284 - +0.4
1,566,284 - +0.1
1,566,284 - -0.0
1,566,284 - -0.9
1,566,284 - -0.2
1,566,284 - +0.3
1,566,343 + ABZR87_RS23195 0.15 +0.0
1,566,344 - ABZR87_RS23195 0.15 +2.2
1,566,344 - ABZR87_RS23195 0.15 +0.1
1,566,431 + ABZR87_RS23195 0.22 +0.0
1,566,431 + ABZR87_RS23195 0.22 -1.4
1,566,434 - ABZR87_RS23195 0.22 -1.7
1,566,452 - ABZR87_RS23195 0.24 +0.1
1,566,452 - ABZR87_RS23195 0.24 +0.7
1,566,452 - ABZR87_RS23195 0.24 -1.2
1,566,512 + ABZR87_RS23195 0.29 -0.2
1,566,544 + ABZR87_RS23195 0.32 +0.4
1,566,544 + ABZR87_RS23195 0.32 +0.9
1,566,545 - ABZR87_RS23195 0.32 -0.7
1,566,731 - ABZR87_RS23195 0.47 +0.9
1,566,763 + ABZR87_RS23195 0.50 -1.5
1,566,763 + ABZR87_RS23195 0.50 -0.0
1,566,763 + ABZR87_RS23195 0.50 -0.2
1,566,763 + ABZR87_RS23195 0.50 +0.5
1,566,763 + ABZR87_RS23195 0.50 -2.8
1,566,764 - ABZR87_RS23195 0.50 +0.2
1,566,841 + ABZR87_RS23195 0.56 -0.2
1,566,841 + ABZR87_RS23195 0.56 -0.9
1,566,841 + ABZR87_RS23195 0.56 -0.5
1,566,841 + ABZR87_RS23195 0.56 +0.2
1,566,842 - ABZR87_RS23195 0.56 -0.5
1,566,859 + ABZR87_RS23195 0.58 -0.5
1,566,922 + ABZR87_RS23195 0.63 +0.1
1,566,922 + ABZR87_RS23195 0.63 +0.8
1,566,922 + ABZR87_RS23195 0.63 +0.1
1,566,922 + ABZR87_RS23195 0.63 +0.4
1,566,922 + ABZR87_RS23195 0.63 -0.1
1,566,923 - ABZR87_RS23195 0.63 +1.0

Or see this region's nucleotide sequence