Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS23180 and ABZR87_RS23185 overlap by 4 nucleotides ABZR87_RS23185 and ABZR87_RS23190 overlap by 1 nucleotides ABZR87_RS23190 and ABZR87_RS23195 are separated by 58 nucleotides
ABZR87_RS23180: ABZR87_RS23180 - ABC transporter ATP-binding protein, at 1,563,514 to 1,564,284
_RS23180
ABZR87_RS23185: ABZR87_RS23185 - branched-chain amino acid ABC transporter permease, at 1,564,281 to 1,565,249
_RS23185
ABZR87_RS23190: ABZR87_RS23190 - branched-chain amino acid ABC transporter permease, at 1,565,249 to 1,566,106
_RS23190
ABZR87_RS23195: ABZR87_RS23195 - ABC transporter substrate-binding protein, at 1,566,165 to 1,567,364
_RS23195
Position (kb)
1565
1566
1567 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1564.459 kb on + strand, within ABZR87_RS23185 at 1564.459 kb on + strand, within ABZR87_RS23185 at 1564.459 kb on + strand, within ABZR87_RS23185 at 1564.459 kb on + strand, within ABZR87_RS23185 at 1564.460 kb on - strand, within ABZR87_RS23185 at 1564.460 kb on - strand, within ABZR87_RS23185 at 1564.460 kb on - strand, within ABZR87_RS23185 at 1564.543 kb on + strand, within ABZR87_RS23185 at 1564.544 kb on - strand, within ABZR87_RS23185 at 1564.544 kb on - strand, within ABZR87_RS23185 at 1564.551 kb on - strand, within ABZR87_RS23185 at 1564.781 kb on - strand, within ABZR87_RS23185 at 1564.781 kb on - strand, within ABZR87_RS23185 at 1564.864 kb on + strand, within ABZR87_RS23185 at 1564.865 kb on - strand, within ABZR87_RS23185 at 1564.865 kb on - strand, within ABZR87_RS23185 at 1564.877 kb on - strand, within ABZR87_RS23185 at 1564.877 kb on - strand, within ABZR87_RS23185 at 1564.877 kb on - strand, within ABZR87_RS23185 at 1564.915 kb on + strand, within ABZR87_RS23185 at 1564.915 kb on + strand, within ABZR87_RS23185 at 1564.916 kb on - strand, within ABZR87_RS23185 at 1564.916 kb on - strand, within ABZR87_RS23185 at 1564.916 kb on - strand, within ABZR87_RS23185 at 1564.916 kb on - strand, within ABZR87_RS23185 at 1565.041 kb on + strand, within ABZR87_RS23185 at 1565.042 kb on - strand, within ABZR87_RS23185 at 1565.059 kb on + strand, within ABZR87_RS23185 at 1565.092 kb on + strand, within ABZR87_RS23185 at 1565.131 kb on + strand, within ABZR87_RS23185 at 1565.132 kb on - strand, within ABZR87_RS23185 at 1565.139 kb on + strand, within ABZR87_RS23185 at 1565.140 kb on - strand, within ABZR87_RS23185 at 1565.230 kb on - strand at 1565.307 kb on + strand at 1565.307 kb on + strand at 1565.307 kb on + strand at 1565.308 kb on - strand at 1565.666 kb on - strand, within ABZR87_RS23190 at 1565.666 kb on - strand, within ABZR87_RS23190 at 1565.847 kb on + strand, within ABZR87_RS23190 at 1565.964 kb on + strand, within ABZR87_RS23190 at 1565.964 kb on + strand, within ABZR87_RS23190 at 1565.964 kb on + strand, within ABZR87_RS23190 at 1565.964 kb on + strand, within ABZR87_RS23190 at 1565.964 kb on + strand, within ABZR87_RS23190 at 1565.964 kb on + strand, within ABZR87_RS23190 at 1565.964 kb on + strand, within ABZR87_RS23190 at 1565.965 kb on - strand, within ABZR87_RS23190 at 1565.965 kb on - strand, within ABZR87_RS23190 at 1565.965 kb on - strand, within ABZR87_RS23190 at 1565.965 kb on - strand, within ABZR87_RS23190 at 1565.979 kb on + strand, within ABZR87_RS23190 at 1565.979 kb on + strand, within ABZR87_RS23190 at 1566.054 kb on + strand at 1566.054 kb on + strand at 1566.055 kb on - strand at 1566.055 kb on - strand at 1566.055 kb on - strand at 1566.096 kb on + strand at 1566.096 kb on + strand at 1566.096 kb on + strand at 1566.097 kb on - strand at 1566.097 kb on - strand at 1566.117 kb on + strand at 1566.117 kb on + strand at 1566.158 kb on + strand at 1566.159 kb on - strand at 1566.159 kb on - strand at 1566.159 kb on - strand at 1566.280 kb on + strand at 1566.281 kb on - strand at 1566.281 kb on - strand at 1566.283 kb on + strand at 1566.283 kb on + strand at 1566.283 kb on + strand at 1566.283 kb on + strand at 1566.283 kb on + strand at 1566.284 kb on - strand at 1566.284 kb on - strand at 1566.284 kb on - strand at 1566.284 kb on - strand at 1566.284 kb on - strand at 1566.284 kb on - strand at 1566.284 kb on - strand at 1566.343 kb on + strand, within ABZR87_RS23195 at 1566.344 kb on - strand, within ABZR87_RS23195 at 1566.344 kb on - strand, within ABZR87_RS23195 at 1566.431 kb on + strand, within ABZR87_RS23195 at 1566.431 kb on + strand, within ABZR87_RS23195 at 1566.434 kb on - strand, within ABZR87_RS23195 at 1566.452 kb on - strand, within ABZR87_RS23195 at 1566.452 kb on - strand, within ABZR87_RS23195 at 1566.452 kb on - strand, within ABZR87_RS23195 at 1566.512 kb on + strand, within ABZR87_RS23195 at 1566.544 kb on + strand, within ABZR87_RS23195 at 1566.544 kb on + strand, within ABZR87_RS23195 at 1566.545 kb on - strand, within ABZR87_RS23195 at 1566.731 kb on - strand, within ABZR87_RS23195 at 1566.763 kb on + strand, within ABZR87_RS23195 at 1566.763 kb on + strand, within ABZR87_RS23195 at 1566.763 kb on + strand, within ABZR87_RS23195 at 1566.763 kb on + strand, within ABZR87_RS23195 at 1566.763 kb on + strand, within ABZR87_RS23195 at 1566.764 kb on - strand, within ABZR87_RS23195 at 1566.841 kb on + strand, within ABZR87_RS23195 at 1566.841 kb on + strand, within ABZR87_RS23195 at 1566.841 kb on + strand, within ABZR87_RS23195 at 1566.841 kb on + strand, within ABZR87_RS23195 at 1566.842 kb on - strand, within ABZR87_RS23195 at 1566.859 kb on + strand, within ABZR87_RS23195 at 1566.922 kb on + strand, within ABZR87_RS23195 at 1566.922 kb on + strand, within ABZR87_RS23195 at 1566.922 kb on + strand, within ABZR87_RS23195 at 1566.922 kb on + strand, within ABZR87_RS23195 at 1566.922 kb on + strand, within ABZR87_RS23195 at 1566.923 kb on - strand, within ABZR87_RS23195
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,564,459 + ABZR87_RS23185 0.18 -0.5 1,564,459 + ABZR87_RS23185 0.18 -0.2 1,564,459 + ABZR87_RS23185 0.18 -0.3 1,564,459 + ABZR87_RS23185 0.18 -0.2 1,564,460 - ABZR87_RS23185 0.18 -0.1 1,564,460 - ABZR87_RS23185 0.18 +0.1 1,564,460 - ABZR87_RS23185 0.18 +0.5 1,564,543 + ABZR87_RS23185 0.27 -0.0 1,564,544 - ABZR87_RS23185 0.27 -0.8 1,564,544 - ABZR87_RS23185 0.27 -0.8 1,564,551 - ABZR87_RS23185 0.28 -0.8 1,564,781 - ABZR87_RS23185 0.52 -1.4 1,564,781 - ABZR87_RS23185 0.52 +0.4 1,564,864 + ABZR87_RS23185 0.60 -0.9 1,564,865 - ABZR87_RS23185 0.60 +1.5 1,564,865 - ABZR87_RS23185 0.60 -0.5 1,564,877 - ABZR87_RS23185 0.62 +0.4 1,564,877 - ABZR87_RS23185 0.62 +0.1 1,564,877 - ABZR87_RS23185 0.62 +0.3 1,564,915 + ABZR87_RS23185 0.65 +1.6 1,564,915 + ABZR87_RS23185 0.65 -1.2 1,564,916 - ABZR87_RS23185 0.66 -2.5 1,564,916 - ABZR87_RS23185 0.66 -0.0 1,564,916 - ABZR87_RS23185 0.66 +0.1 1,564,916 - ABZR87_RS23185 0.66 +0.4 1,565,041 + ABZR87_RS23185 0.78 -0.4 1,565,042 - ABZR87_RS23185 0.79 +0.7 1,565,059 + ABZR87_RS23185 0.80 -0.5 1,565,092 + ABZR87_RS23185 0.84 -0.1 1,565,131 + ABZR87_RS23185 0.88 -1.4 1,565,132 - ABZR87_RS23185 0.88 -0.2 1,565,139 + ABZR87_RS23185 0.89 +0.4 1,565,140 - ABZR87_RS23185 0.89 +0.0 1,565,230 - +0.2 1,565,307 + -2.3 1,565,307 + +0.4 1,565,307 + +0.3 1,565,308 - -0.2 1,565,666 - ABZR87_RS23190 0.49 -0.5 1,565,666 - ABZR87_RS23190 0.49 -1.2 1,565,847 + ABZR87_RS23190 0.70 -1.2 1,565,964 + ABZR87_RS23190 0.83 +0.5 1,565,964 + ABZR87_RS23190 0.83 -0.1 1,565,964 + ABZR87_RS23190 0.83 -0.9 1,565,964 + ABZR87_RS23190 0.83 -0.8 1,565,964 + ABZR87_RS23190 0.83 -0.8 1,565,964 + ABZR87_RS23190 0.83 -0.9 1,565,964 + ABZR87_RS23190 0.83 -1.0 1,565,965 - ABZR87_RS23190 0.83 +0.8 1,565,965 - ABZR87_RS23190 0.83 -0.3 1,565,965 - ABZR87_RS23190 0.83 +0.3 1,565,965 - ABZR87_RS23190 0.83 +0.3 1,565,979 + ABZR87_RS23190 0.85 -1.0 1,565,979 + ABZR87_RS23190 0.85 -1.1 1,566,054 + -0.6 1,566,054 + -0.1 1,566,055 - +1.1 1,566,055 - -0.9 1,566,055 - -1.3 1,566,096 + -0.6 1,566,096 + +0.2 1,566,096 + +0.2 1,566,097 - +0.3 1,566,097 - +0.1 1,566,117 + -0.0 1,566,117 + -0.1 1,566,158 + -1.7 1,566,159 - -0.3 1,566,159 - -0.1 1,566,159 - -1.9 1,566,280 + +0.3 1,566,281 - +1.8 1,566,281 - +0.7 1,566,283 + +0.6 1,566,283 + -0.2 1,566,283 + -0.2 1,566,283 + +0.6 1,566,283 + -0.4 1,566,284 - -0.0 1,566,284 - +0.4 1,566,284 - +0.1 1,566,284 - -0.0 1,566,284 - -0.9 1,566,284 - -0.2 1,566,284 - +0.3 1,566,343 + ABZR87_RS23195 0.15 +0.0 1,566,344 - ABZR87_RS23195 0.15 +2.2 1,566,344 - ABZR87_RS23195 0.15 +0.1 1,566,431 + ABZR87_RS23195 0.22 +0.0 1,566,431 + ABZR87_RS23195 0.22 -1.4 1,566,434 - ABZR87_RS23195 0.22 -1.7 1,566,452 - ABZR87_RS23195 0.24 +0.1 1,566,452 - ABZR87_RS23195 0.24 +0.7 1,566,452 - ABZR87_RS23195 0.24 -1.2 1,566,512 + ABZR87_RS23195 0.29 -0.2 1,566,544 + ABZR87_RS23195 0.32 +0.4 1,566,544 + ABZR87_RS23195 0.32 +0.9 1,566,545 - ABZR87_RS23195 0.32 -0.7 1,566,731 - ABZR87_RS23195 0.47 +0.9 1,566,763 + ABZR87_RS23195 0.50 -1.5 1,566,763 + ABZR87_RS23195 0.50 -0.0 1,566,763 + ABZR87_RS23195 0.50 -0.2 1,566,763 + ABZR87_RS23195 0.50 +0.5 1,566,763 + ABZR87_RS23195 0.50 -2.8 1,566,764 - ABZR87_RS23195 0.50 +0.2 1,566,841 + ABZR87_RS23195 0.56 -0.2 1,566,841 + ABZR87_RS23195 0.56 -0.9 1,566,841 + ABZR87_RS23195 0.56 -0.5 1,566,841 + ABZR87_RS23195 0.56 +0.2 1,566,842 - ABZR87_RS23195 0.56 -0.5 1,566,859 + ABZR87_RS23195 0.58 -0.5 1,566,922 + ABZR87_RS23195 0.63 +0.1 1,566,922 + ABZR87_RS23195 0.63 +0.8 1,566,922 + ABZR87_RS23195 0.63 +0.1 1,566,922 + ABZR87_RS23195 0.63 +0.4 1,566,922 + ABZR87_RS23195 0.63 -0.1 1,566,923 - ABZR87_RS23195 0.63 +1.0
Or see this region's nucleotide sequence