Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20580

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS20570 and ABZR87_RS20575 are separated by 332 nucleotidesABZR87_RS20575 and ABZR87_RS20580 are separated by 114 nucleotidesABZR87_RS20580 and ABZR87_RS20585 are separated by 265 nucleotidesABZR87_RS20585 and ABZR87_RS20590 are separated by 36 nucleotidesABZR87_RS20590 and ABZR87_RS20595 are separated by 60 nucleotides ABZR87_RS20570: ABZR87_RS20570 - translesion DNA synthesis-associated protein ImuA, at 1,003,999 to 1,004,955 _RS20570 ABZR87_RS20575: ABZR87_RS20575 - 5S ribosomal RNA, at 1,005,288 to 1,005,400 _RS20575 ABZR87_RS20580: ABZR87_RS20580 - 23S ribosomal RNA, at 1,005,515 to 1,008,393 _RS20580 ABZR87_RS20585: ABZR87_RS20585 - tRNA-Ala, at 1,008,659 to 1,008,734 _RS20585 ABZR87_RS20590: ABZR87_RS20590 - tRNA-Ile, at 1,008,771 to 1,008,847 _RS20590 ABZR87_RS20595: ABZR87_RS20595 - 16S ribosomal RNA, at 1,008,908 to 1,010,447 _RS20595 Position (kb) 1005 1006 1007 1008 1009Strain fitness (log2 ratio) -1 0 1at 1004.643 kb on + strand, within ABZR87_RS20570at 1004.643 kb on + strand, within ABZR87_RS20570at 1004.644 kb on - strand, within ABZR87_RS20570at 1004.644 kb on - strand, within ABZR87_RS20570at 1004.737 kb on + strand, within ABZR87_RS20570at 1004.738 kb on - strand, within ABZR87_RS20570at 1004.738 kb on - strand, within ABZR87_RS20570at 1004.738 kb on - strand, within ABZR87_RS20570at 1004.738 kb on - strand, within ABZR87_RS20570at 1004.760 kb on - strand, within ABZR87_RS20570at 1004.760 kb on - strand, within ABZR87_RS20570at 1004.839 kb on + strand, within ABZR87_RS20570at 1004.839 kb on + strand, within ABZR87_RS20570at 1004.840 kb on - strand, within ABZR87_RS20570at 1004.840 kb on - strand, within ABZR87_RS20570at 1004.840 kb on - strand, within ABZR87_RS20570at 1004.906 kb on + strandat 1004.999 kb on - strandat 1005.024 kb on + strandat 1005.153 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
1,004,643 + ABZR87_RS20570 0.67 +0.9
1,004,643 + ABZR87_RS20570 0.67 -0.4
1,004,644 - ABZR87_RS20570 0.67 +0.7
1,004,644 - ABZR87_RS20570 0.67 -0.1
1,004,737 + ABZR87_RS20570 0.77 +0.3
1,004,738 - ABZR87_RS20570 0.77 -0.4
1,004,738 - ABZR87_RS20570 0.77 +1.3
1,004,738 - ABZR87_RS20570 0.77 -0.0
1,004,738 - ABZR87_RS20570 0.77 -0.4
1,004,760 - ABZR87_RS20570 0.80 -0.6
1,004,760 - ABZR87_RS20570 0.80 +0.2
1,004,839 + ABZR87_RS20570 0.88 -0.7
1,004,839 + ABZR87_RS20570 0.88 +0.5
1,004,840 - ABZR87_RS20570 0.88 -0.7
1,004,840 - ABZR87_RS20570 0.88 +0.8
1,004,840 - ABZR87_RS20570 0.88 -0.8
1,004,906 + -0.7
1,004,999 - +0.7
1,005,024 + +1.5
1,005,153 + +0.8

Or see this region's nucleotide sequence